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* gnu: r-biocviews: Update to 1.50.5.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.5. Ricardo Wurmus2018-11-091-2/+2
* gnu: r-sn: Update to 1.5-3.•••* gnu/packages/statistics.scm (r-sn): Update to 1.5-3. Ricardo Wurmus2018-11-091-2/+2
* gnu: r-rgooglemaps: Update to 1.4.3.•••* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.3. Ricardo Wurmus2018-11-091-2/+2
* gnu: r-tmb: Update to 1.7.15.•••* gnu/packages/cran.scm (r-tmb): Update to 1.7.15. Ricardo Wurmus2018-11-091-2/+2
* gnu: r-jomo: Update to 2.6-5.•••* gnu/packages/cran.scm (r-jomo): Update to 2.6-5. [propagated-inputs]: Add r-mass. Ricardo Wurmus2018-11-091-2/+3
* gnu: r-rcpp: Update to 1.0.0.•••* gnu/packages/cran.scm (r-rcpp): Update to 1.0.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2018-11-091-2/+4
* gnu: Add r-arm.•••* gnu/packages/cran.scm (r-arm): New variable. Ricardo Wurmus2018-11-091-0/+27
* gnu: Add r-feature.•••* gnu/packages/cran.scm (r-feature): New variable. Ricardo Wurmus2018-11-091-0/+26
* gnu: Add r-ks.•••* gnu/packages/cran.scm (r-ks): New variable. Ricardo Wurmus2018-11-091-0/+32
* gnu: Add r-misc3d.•••* gnu/packages/cran.scm (r-misc3d): New variable. Ricardo Wurmus2018-11-091-0/+20
* gnu: Add r-multicool.•••* gnu/packages/cran.scm (r-multicool): New variable. Ricardo Wurmus2018-11-091-0/+21
* gnu: Add r-rgl.•••* gnu/packages/cran.scm (r-rgl): New variable. Ricardo Wurmus2018-11-091-1/+47
* gnu: Add r-destiny.•••* gnu/packages/bioconductor.scm (r-destiny): New variable. Ricardo Wurmus2018-11-091-0/+35
* gnu: Add r-h5.•••* gnu/packages/cran.scm (r-h5): New variable. Ricardo Wurmus2018-11-091-0/+31
* gnu: Add r-aggregation.•••* gnu/packages/cran.scm (r-aggregation): New variable. Ricardo Wurmus2018-11-091-0/+20
* gnu: Add r-savr.•••* gnu/packages/bioconductor.scm (r-savr): New variable. Ricardo Wurmus2018-11-091-0/+26
* gnu: r-with-tests: Update to 3.5.1.•••* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1. Ricardo Wurmus2018-11-091-2/+2
* gnu: r-with-tests: Use INVOKE.•••* gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-091-2/+2
* gnu: Add emacs-gtk-look.•••* gnu/packages/emacs.scm (emacs-gtk-look): New variable. Pierre Neidhardt2018-11-091-0/+38
* gnu: Add xmlrpc-c.•••* gnu/packages/xml.scm (xmlrpc-c): New variable. Pierre Neidhardt2018-11-091-0/+38
* gnu: guile-newt: Update to revision 1.•••* gnu/packages/guile.scm (guile-newt): Update to revision 1. Mathieu Othacehe2018-11-091-3/+3
* gnu: powertabeditor: Fetch sources from git.•••* gnu/packages/music.scm (powertabeditor)[source]: Fetch from git. Ricardo Wurmus2018-11-091-6/+6
* gnu: powertabeditor: Use INVOKE.•••* gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-091-8/+8
* gnu: wxmaxima: Update to 18.10.1.•••* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1. [source]: Update URL and remove patch. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch. Kei Kebreau2018-11-093-33/+4
* gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].•••* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11. Leo Famulari2018-11-081-2/+2
* gnu: Add emacs-clang-format.•••* gnu/packages/emacs.scm (emacs-clang-format): New variable. Pierre Neidhardt2018-11-081-0/+37
* gnu: kodi: Update to 18.0b5.•••* gnu/packages/kodi.scm (kodi): Update to 18.0b5. [source]: Update snippet. [inputs]: Add flatbuffers, fstrcmp. (crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989. (libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3. (libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5. Efraim Flashner2018-11-081-20/+19
* gnu: Add fstrcmp.•••* gnu/packages/kodi.scm (fstrcmp): New variable. Efraim Flashner2018-11-081-0/+31
* doc: Add index entries.•••* doc/guix.texi: Added various cindex tags to assist readers. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Laura Lazzati2018-11-081-0/+6
* services: elogind: Fix spelling errors of left value fields in elogind config...•••* gnu/services/desktop.scm (elogind-configuration-file)[ini-file]: Fix spelling of left value fields: InhibitDelayMaxSecs, HoldoffTimeoutSecs, IdleActionSeconds, RemoveIpc. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Stefanović2018-11-081-4/+4
* gnu: python-ilinkedlist: Update to 0.3.1.•••* gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Luther Thompson2018-11-081-2/+2
* gnu: Add python-pyelftools.•••* gnu/packages/python.scm (python-pyelftools): New public variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vagrant Cascadian2018-11-081-0/+25
* gnu: libmusicbrainz: Use INVOKE.•••* gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-8/+9
* gnu: pd: Remove custom autoconf phase.•••* gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase. Ricardo Wurmus2018-11-081-3/+1
* gnu: cmus: Fetch sources from git.•••* gnu/packages/music.scm (cmus)[source]: Fetch from git. Ricardo Wurmus2018-11-081-6/+6
* gnu: cmus: Use INVOKE.•••* gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-10/+8
* gnu: pcc: Use INVOKE.•••* gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-3/+2
* gnu: pplacer-scripts: Use INVOKE.•••* gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-2/+1
* gnu: roary: Use INVOKE.•••* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-4/+5
* gnu: seek: Use INVOKE.•••* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase. Ricardo Wurmus2018-11-081-11/+14
* gnu: sailfish: Use INVOKE.•••* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of SYSTEM*. Ricardo Wurmus2018-11-081-4/+4
* gnu: vsearch: Update to 2.9.1.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1. * gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update. Ricardo Wurmus2018-11-082-5/+5
* gnu: sra-tools: Update to 2.9.3.•••* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3. [arguments]: Remove build phase patch-away-glibc-conflict. Ricardo Wurmus2018-11-081-14/+2
* gnu: plink-ng: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git. Ricardo Wurmus2018-11-081-5/+6
* gnu: ncbi-vdb: Update to 2.9.3.•••* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3. Ricardo Wurmus2018-11-081-2/+2
* gnu: ngs-sdk: Update to 2.9.3.•••* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3. Ricardo Wurmus2018-11-081-2/+2
* gnu: ngs-sdk: Use INVOKE.•••* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-3/+4
* gnu: emboss: Use INVOKE.•••* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-1/+1
* gnu: taxtastic: Use INVOKE.•••* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-2/+1
* gnu: sra-tools: Use INVOKE.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and return #T unconditionally. Ricardo Wurmus2018-11-081-3/+3