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* gnu: Add r-genetics.•••* gnu/packages/cran.scm (r-genetics): New variable. Ricardo Wurmus2019-03-251-0/+30
* gnu: linux-libre: Update to 5.0.4.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.4. (%linux-libre-hash): Update hash. Mark H Weaver2019-03-251-2/+2
* gnu: linux-libre@4.19: Update to 4.19.31.•••* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.31. (%linux-libre-4.19-hash): Update hash. Mark H Weaver2019-03-251-2/+2
* gnu: linux-libre@4.14: Update to 4.14.108.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.108. (%linux-libre-4.14-hash): Update hash. Mark H Weaver2019-03-251-2/+2
* gnu: linux-libre@4.9: Update to 4.9.165.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.165. Mark H Weaver2019-03-251-2/+2
* gnu: linux-libre@4.4: Update to 4.4.177.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.177. Mark H Weaver2019-03-251-2/+2
* services: xorg: Fix cases where 'keyboard-layout' is #f.•••This is a followup to 598757e038ab5dea3b59c9c248a2ad860c41fe62. * gnu/services/xorg.scm (xorg-configuration->file): Check whether 'xorg-configuration-keyboard-layout' returns #f before calling 'keyboard-layout-options'. Ludovic Courtès2019-03-251-2/+2
* gnu: perl-uri-escape: Update source tarball URL.•••* gnu/packages/perl-web.scm (perl-uri-escape)[source]: Update URL. Oleg Pykhalov2019-03-251-1/+1
* gnu: perl6-meta6: Remove unsupported syntax from description.•••* gnu/packages/perl6.scm (perl6-meta6)[description]: Remove @quot. Ricardo Wurmus2019-03-241-5/+5
* gnu: perl6-json-class: Remove unsupported syntax from description.•••* gnu/packages/perl6.scm (perl6-json-class)[description]: Remove @quot. Ricardo Wurmus2019-03-241-5/+6
* gnu: Add r-rmetasim.•••* gnu/packages/cran.scm (r-rmetasim): New variable. Ricardo Wurmus2019-03-241-0/+27
* gnu: Add r-pegas.•••* gnu/packages/cran.scm (r-pegas): New variable. Ricardo Wurmus2019-03-241-0/+26
* gnu: Add r-adegenet.•••* gnu/packages/cran.scm (r-adegenet): New variable. Ricardo Wurmus2019-03-241-0/+39
* gnu: r-seqinr: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-seqinr): Move from here... * gnu/packages/cran.scm (r-seqinr): ...to here. Ricardo Wurmus2019-03-242-25/+25
* gnu: r-acsnminer: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-acsnminer): Move from here... * gnu/packages/cran.scm (r-acsnminer): ...to here. Ricardo Wurmus2019-03-242-26/+26
* gnu: Add r-spdep.•••* gnu/packages/cran.scm (r-spdep): New variable. Ricardo Wurmus2019-03-241-0/+35
* gnu: Add r-sf.•••* gnu/packages/cran.scm (r-sf): New variable. Ricardo Wurmus2019-03-241-0/+35
* gnu: Add r-deldir.•••* gnu/packages/cran.scm (r-deldir): New variable. Ricardo Wurmus2019-03-241-0/+24
* gnu: Add r-learnbayes.•••* gnu/packages/cran.scm (r-learnbayes): New variable. Ricardo Wurmus2019-03-241-0/+25
* gnu: Add r-spdata.•••* gnu/packages/cran.scm (r-spdata): New variable. Ricardo Wurmus2019-03-241-0/+25
* gnu: Add r-classint.•••* gnu/packages/cran.scm (r-classint): New variable. Ricardo Wurmus2019-03-241-0/+24
* gnu: Add r-units.•••* gnu/packages/cran.scm (r-units): New variable. Ricardo Wurmus2019-03-241-0/+27
* gnu: Add udunits.•••* gnu/packages/c.scm (udunits): New variable. Ricardo Wurmus2019-03-241-2/+32
* gnu: Add r-snpmaxsel.•••* gnu/packages/cran.scm (r-snpmaxsel): New variable. Ricardo Wurmus2019-03-241-0/+24
* gnu: Add r-stepwise.•••* gnu/packages/cran.scm (r-stepwise): New variable. Ricardo Wurmus2019-03-241-0/+19
* gnu: perl-time-hires: Update source tarball URL.•••* gnu/packages/perl.scm (perl-time-hires)[source]: Update URL. Oleg Pykhalov2019-03-251-1/+1
* gnu: Add xfce4-whiskermenu-plugin.•••* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pkill -92019-03-241-0/+35
* doc: Document keyboard layout.•••* doc/guix.texi (Keyboard Layout): New node. (Bootloader Configuration): Remove examples and refer to it. (X Window): Add cross-reference. Ludovic Courtès2019-03-241-18/+108
* system: Initialize console keyboard layout in the initrd.•••Partially fixes <https://bugs.gnu.org/25453>. * gnu/system.scm (<operating-system>)[keyboard-layout]: New field. (operating-system-initrd-file): Pass #:keyboard-layout to MAKE-INITRD. * gnu/system/linux-initrd.scm (raw-initrd): Add #:keyboard-layout. Pass #:keymap-file to 'boot-system'. (base-initrd): Add #:keyboard-layout. [helper-packages]: Add LOADKEYS-STATIC when KEYBOARD-LAYOUT is true. Pass #:keyboard-layout to 'raw-initrd'. * gnu/build/linux-boot.scm (boot-system): Add #:keymap-file and honor it. * doc/guix.texi (operating-system Reference): Document the 'keyboard-layout' field. (Initial RAM Disk): Update 'raw-initrd' and 'base-initrd' documentation. Ludovic Courtès2019-03-244-7/+75
* gnu: Add loadkeys-static.•••* gnu/packages/linux.scm (loadkeys-static): New variable. Ludovic Courtès2019-03-241-0/+37
* vm: 'virtualized-operating-system' inherits from the user's bootloader config.•••* gnu/system/vm.scm (virtualized-operating-system): Inherit from the bootloader of OS. Ludovic Courtès2019-03-241-0/+1
* services: xorg: Add a 'keyboard-layout' field in <xorg-configuration>.•••* gnu/services/xorg.scm (<xorg-configuration>)[keyboard-layout]: New field. (xorg-configuration->file)[input-class-section]: New procedure. Use it. * doc/guix.texi (X Window): Document 'keyboard-layout' field. Co-authored-by: nee <nee-git@hidamari.blue> Ludovic Courtès2019-03-242-0/+50
* services: sddm, slim, gdm: Take an <xorg-configuration> record.•••* gnu/services/sddm.scm (<sddm-configuration>)[xorg-server-path] [xserver-arguments]: Remove. [xorg-configuration]: New field. (sddm-configuration-file): Adjust accordingly. * gnu/services/xorg.scm (<slim-configuration>)[startx]: Remove. [xorg-configuration]: New field. (slim-shepherd-service, slim-service): Adjust accordingly. (<gdm-configuration>)[x-server]: Remove. [xorg-configuration]: New field. (gdm-shepherd-service, gdm-service): Adjust accordingly. * doc/guix.texi (X Window): Update accordingly. Ludovic Courtès2019-03-243-23/+21
* services: xorg: Define an <xorg-configuration> record type.•••* gnu/services/xorg.scm (<xorg-configuration>): New record type. (xorg-configuration-file): Remove. (xorg-wrapper): Remove #:modules, #:configuration-file, and #:xorg-server; add optional 'config' parameter instead. Adjust accordingly. (xorg-start-command): Likewise. * doc/guix.texi (X Window): Document 'xorg-configuration'. Update 'xorg-start-command' documentation. Remove 'xorg-configuration-file' documentation. Ludovic Courtès2019-03-242-142/+95
* services: xorg: Remove unused #:guile parameter.•••* gnu/services/xorg.scm (xorg-wrapper): Remove #:guile, which was unused. (xorg-start-command): Likewise. (xinitrc): Likewise. Ludovic Courtès2019-03-242-8/+3
* bootloader: Add a 'keyboard-layout' field.•••* gnu/bootloader/grub.scm (keyboard-layout-file): New procedure. (grub-configuration-file)[keyboard-layout-file]: New variable. [builder]: Use it. * gnu/bootloader.scm (<bootloader-configuration>)[keyboard-layout]: New field. * doc/guix.texi (Bootloader Configuration): Document it. Co-authored-by: nee <nee-git@hidamari.blue> Ludovic Courtès2019-03-243-0/+66
* Add (gnu system keyboard).•••* gnu/system/keyboard.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu.scm (%public-modules): Add it. Ludovic Courtès2019-03-243-1/+101
* bootloader: Reindent record type definition.•••* gnu/bootloader.scm (<bootloader-configuration>): Reindent. Ludovic Courtès2019-03-241-19/+19
* bootloader: Remove unused 'additional-configuration' field.•••* gnu/bootloader.scm (<bootloader-configuration>)[additional-configuration]: Remove. Ludovic Courtès2019-03-241-2/+0
* gnu: flatpak: Use glib-or-gtk-build-system.•••This wraps 'flatpak' such that GIO_EXTRA_MODULES is set, thereby allowing GIO (part of GLib) to find the GnuTLS-based TLS backend that glib-networking provides. Fixes <https://bugs.gnu.org/34861>. Reported by Raghav Gururajan <rvgn@disroot.org>. * gnu/packages/package-management.scm (flatpak)[build-system]: Change to GLIB-OR-GTK-BUILD-SYSTEM. Ludovic Courtès2019-03-241-1/+6
* gnu: avidemux: Update to 2.7.3.•••* gnu/packages/video.scm (avidemux): Update to 2.7.3. Tobias Geerinckx-Rice2019-03-241-3/+3
* gnu: Add r-untb.•••* gnu/packages/cran.scm (r-untb): New variable. Ricardo Wurmus2019-03-241-0/+23
* gnu: Add r-brobdingnag.•••* gnu/packages/cran.scm (r-brobdingnag): New variable. Ricardo Wurmus2019-03-241-0/+23
* gnu: Add r-partitions.•••* gnu/packages/cran.scm (r-partitions): New variable. Ricardo Wurmus2019-03-241-0/+24
* gnu: Add r-bedr.•••* gnu/packages/cran.scm (r-bedr): New variable. Ricardo Wurmus2019-03-241-0/+34
* gnu: Add r-wgaim.•••* gnu/packages/cran.scm (r-wgaim): New variable. Ricardo Wurmus2019-03-241-0/+22
* gnu: Add r-lemon.•••* gnu/packages/cran.scm (r-lemon): New variable. Ricardo Wurmus2019-03-241-0/+28
* gnu: r-phangorn: Update to 2.5.3.•••* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.3. Ricardo Wurmus2019-03-241-2/+2
* gnu: r-gqtlstats: Update to 1.14.1.•••* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.1. Ricardo Wurmus2019-03-241-2/+2
* gnu: r-rbgl: Update to 1.58.2.•••* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.2. Ricardo Wurmus2019-03-241-2/+2