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* gnu: git: Update to 2.19.0.•••* gnu/packages/version-control.scm (git): Update to 2.19.0. (cgit)[inputs]: Use the source of Git 2.18.0. Leo Famulari2018-09-101-4/+11
* profiles: Correctly deal with etc/ being a relative symlink.•••Fixes <https://bugs.gnu.org/32686>. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * guix/build/profiles.scm (ensure-writable-directory): Add #:symlink. [absolute?]: New procedure. [unsymlink]: Use it to determine how to resolve readlink's result. (build-profile): Pass SYMLINK to 'ensure-writable-directory'. * tests/profiles.scm ("profile-derivation when etc/ is a relative symlink"): New test. Ludovic Courtès2018-09-112-3/+48
* gnu: Add r-abd.•••* gnu/packages/cran.scm (r-abd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> pimi2018-09-111-0/+22
* gnu: Add r-mosaic.•••* gnu/packages/cran.scm (r-mosaic): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> pimi2018-09-111-0/+40
* gnu: Add r-mosaicdata.•••* gnu/packages/cran.scm (r-mosaicdata): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> pimi2018-09-111-0/+19
* gnu: guitarix: Update to 0.37.3.•••* gnu/packages/audio.scm (guitarix): Update to 0.37.3. [inputs]: Add curl. Ricardo Wurmus2018-09-101-2/+3
* gnu: guitarix-lv2: Use correct configure flag.•••* gnu/packages/audio.scm (guitarix-lv2)[arguments]: Change configure flag. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Thorsten Wilms2018-09-101-1/+1
* gnu: kakoune: Use HTTPS home page.•••* gnu/packages/text-editors.scm (kakoune)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-09-101-1/+1
* gnu: mcrl2: Use HTTPS home page.•••* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-09-101-1/+1
* gnu: tor: Update to 0.3.4.8.•••* gnu/packages/tor.scm (tor): Update to 0.3.4.8. Tobias Geerinckx-Rice2018-09-101-3/+3
* gnu: kakoune: Update to 2018.09.04.•••* gnu/packages/text-editors.scm (kakoune): Update to 2018.09.04. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: python-binaryornot: Update to 0.4.4.•••* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: python-parse: Update to 1.8.4.•••* gnu/packages/python.scm (python-parse): Update to 1.8.4. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: python-parse: Mark up description.•••* gnu/packages/python.scm (python-parse)[description]: Use @code{}. Tobias Geerinckx-Rice2018-09-101-1/+1
* gnu: python-jedi: Update to 0.12.1.•••* gnu/packages/python.scm (python-jedi): Update to 0.12.1. [synopsis, description]: Adjust to expanded functionality. Tobias Geerinckx-Rice2018-09-101-6/+9
* gnu: python-parso: Update to 0.3.1.•••* gnu/packages/python.scm (python-parso): Update to 0.3.1. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: qtractor: Update to 0.9.2.•••* gnu/packages/music.scm (qtractor): Update to 0.9.2. [arguments]: Remove obsolete Qt 5.11 workaround. Tobias Geerinckx-Rice2018-09-101-14/+3
* Adjust all users of (gnu packages ldc) to use (gnu packages dlang).•••This is a followup to commit 98d6543f86d01486c2f6e808eedd97c601ba3e7a. * gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust accordingly. Leo Famulari2018-09-102-3/+3
* gnu: Add libabigail.•••* gnu/packages/elf.scm (libabigail): New public variable. Marius Bakke2018-09-101-1/+71
* gnu: python-debian: Update home page.•••* gnu/packages/python.scm (python-debian)[home-page]: Set to source repository. Marius Bakke2018-09-101-1/+1
* gnu: python-libarchive-c: Update to 2.8.•••* gnu/packages/python.scm (python-libarchive-c): Update to 2.8. [arguments]: Replace 'check' phase. [native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST. Marius Bakke2018-09-101-3/+8
* gnu: python-tlsh: Update to 3.4.5.•••* gnu/packages/python.scm (python-tlsh): Update to 3.4.5. Marius Bakke2018-09-101-2/+2
* gnu: python-cryptography: Update to 2.3.1.•••* gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.3.1. Marius Bakke2018-09-101-4/+4
* gnu: cloc: Update source hash.•••The upstream tarball was modified in place. The only changes are: --- /gnu/store/5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar.gz +++ /gnu/store/pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar.gz ├── filetype from file(1) │ @@ -1 +1 @@ │ -gzip compressed data, last modified: Fri Sep 7 18:22:49 2018, from Unix │ +gzip compressed data, last modified: Sat Sep 8 14:09:43 2018, from Unix │ --- 5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar ├── +++ pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar │ ├── file list │ │ @@ -1,13 +1,13 @@ │ │ -rwxrwxr-x 0 al (1000) al (1000) 545021 2018-09-07 18:21:22 cloc-1.78/cloc │ │ -rwxrwxr-x 0 al (1000) al (1000) 1818 2018-09-07 18:21:22 cloc-1.78/sqlite_formatter │ │ -drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-07 18:21:22 cloc-1.78/Unix/ │ │ --rwxrwxr-x 0 al (1000) al (1000) 498571 2018-09-07 18:21:22 cloc-1.78/Unix/cloc │ │ +drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-08 14:09:23 cloc-1.78/Unix/ │ │ +-rwxrwxr-x 0 al (1000) al (1000) 498537 2018-09-08 14:09:22 cloc-1.78/Unix/cloc │ │ -rwxrwxr-x 0 al (1000) al (1000) 32382 2018-09-07 18:21:22 cloc-1.78/Unix/t/00_C.t │ │ -rwxrwxr-x 0 al (1000) al (1000) 12614 2018-09-07 18:21:22 cloc-1.78/Unix/t/01_opts.t │ │ -rw-rw-r-- 0 al (1000) al (1000) 862 2018-09-07 18:21:22 cloc-1.78/Unix/README │ ├── cloc-1.78/Unix/cloc │ │ @@ -1,8 +1,7 @@ │ │ -#!/usr/local/perl/5.28.0/bin/perl │ │ #!/usr/bin/env perl * gnu/packages/code.scm (cloc)[source]: Update sha256 hash. Tobias Geerinckx-Rice2018-09-101-1/+1
* gnu: nano: Update to 3.0.•••* gnu/packages/nano.scm (nano): Update to 3.0. Leo Famulari2018-09-101-2/+2
* gnu: linux-libre: Update to 4.18.7.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7. (%linux-libre-hash): Update hash. Mark H Weaver2018-09-101-2/+2
* gnu: linux-libre@4.14: Update to 4.14.69.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69. (%linux-libre-4.14-hash): Update hash. Mark H Weaver2018-09-101-2/+2
* gnu: linux-libre@4.9: Update to 4.9.126.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126. Mark H Weaver2018-09-101-2/+2
* gnu: linux-libre@4.4: Update to 4.4.155.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155. Mark H Weaver2018-09-101-2/+2
* gnu: gnome-mpv: Update to 0.15.•••* gnu/packages/video.scm (gnome-mpv): Update to 0.15. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: fortify-headers: Update to 1.0.•••* gnu/packages/suckless.scm (fortify-headers): Update to 1.0. Tobias Geerinckx-Rice2018-09-101-4/+4
* gnu: python-genshi: Update to 0.7.1.•••* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches. * gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch, gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch, gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch, gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch, gnu/packages/patches/python-genshi-isstring-helper.patch, gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice2018-09-108-437/+8
* gnu: python-sockjs-tornado: Update to 1.0.5.•••* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5. Tobias Geerinckx-Rice2018-09-101-2/+2
* gnu: python-sockjs-tornado: Edit synopsis & description.•••* gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis] [description]: Pick nits. Tobias Geerinckx-Rice2018-09-101-3/+3
* gnu: Rename ldc.scm to dlang.scm.•••* gnu/packages/ldc.scm: Rename to... * gnu/packages/dlang.scm: ... this. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. Pjotr Prins2018-09-102-2/+2
* gnu: ldc: Update to 1.10.0.•••* gnu/packages/ldc.scm (ldc): Update to 1.10.0. [native-inputs]: Switch to LLVM and CLANG. (ldc-bootstrap)[synopsis, description]: Tweak. * gnu/packages/patches/ldc-disable-phobos-tests.patch: New file. * gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pjotr Prins2018-09-104-101/+37
* gnu: Add hstr.•••* gnu/packages/shellutils.scm (hstr): New variable. Benjamin Slade2018-09-101-0/+47
* substitute: Ignore exceptions thrown by 'set-thread-name'.•••Fixes <https://bugs.gnu.org/32669>. Reported by Ricardo Wurmus <rekado@elephly.net>. * guix/scripts/substitute.scm (guix-substitute): Swallow 'system-error' exceptions around 'set-thread-name' call. Ludovic Courtès2018-09-101-1/+4
* syscalls: Report lack of a libc symbol as ENOSYS.•••* guix/build/syscalls.scm (syscall->procedure): Throw to 'system-error with ENOSYS when NAME cannot be found. Ludovic Courtès2018-09-101-2/+2
* gnu: emacs-guix: Update to 0.5.•••* gnu/packages/emacs.scm (emacs-guix): Update to 0.5. [propagated-inputs]: Add 'guile-gcrypt'. [arguments]: Adjust #:configure-flags accordingly. Alex Kost2018-09-101-15/+20
* gnu: emacs-build-farm: Update to 0.2.1.•••* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1. Change source from gitlab to notabug. Alex Kost2018-09-101-5/+5
* gnu: emacs-bui: Update to 1.2.0.•••* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0. Change source from github to notabug. Alex Kost2018-09-101-8/+8
* gnu: Add python-pygenometracks.•••* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable. Ricardo Wurmus2018-09-101-0/+31
* gnu: Add python-hicexplorer.•••* gnu/packages/bioinformatics.scm (python-hicexplorer): New variable. Ricardo Wurmus2018-09-101-0/+53
* gnu: Add python-cooler.•••* gnu/packages/bioinformatics.scm (python-cooler): New variable. Ricardo Wurmus2018-09-101-0/+37
* gnu: Add python-pyfaidx.•••* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable. Ricardo Wurmus2018-09-101-0/+22
* gnu: Add python-pypairix.•••* gnu/packages/bioinformatics.scm (python-pypairix): New variable. Ricardo Wurmus2018-09-101-0/+24
* gnu: Add python-intervaltree.•••* gnu/packages/bioinformatics.scm (python-intervaltree): New variable. Ricardo Wurmus2018-09-101-0/+28
* gnu: Add python-dask.•••* gnu/packages/python.scm (python-dask): New variable. Ricardo Wurmus2018-09-101-0/+45
* gnu: Add python-partd.•••* gnu/packages/python.scm (python-partd): New variable. Ricardo Wurmus2018-09-101-0/+25
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