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* gnu: emacs-org: Update to 9.4.•••* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4. (emacs-org-contrib): Update to 20200914. Nicolas Goaziou2020-09-151-4/+4
* gnu: roffit: Adjust install phase.•••* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove custom 'pre-install phase. Replace 'install phase to also install manpage. Efraim Flashner2020-09-151-7/+5
* gnu: roffit: Wrap binary.•••Fixes <https://debbugs.gnu.org/43306>. * gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to help find perl libraries. Efraim Flashner2020-09-151-2/+8
* gnu: bsequencer: Update to 1.8.0.•••* gnu/packages/music.scm (bsequencer): Update to 1.8.0. Ricardo Wurmus2020-09-151-2/+2
* services: docker: Fix service definition.•••This commit follows a404716d411cf7cd49ff02e3100f0bbf6622d6d5. * gnu/services/docker.scm (docker-configuration)[docker-cli]: New record field. (docker-service-type): Use this. * doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this. Oleg Pykhalov2020-09-152-2/+8
* gnu: kdenlive: Change source URL to follow permanent redirection.•••* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow permanent redirection. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri2020-09-141-1/+1
* gnu: kde: kdenlive: Make breeze theme available at runtime.•••* gnu/packages/kde.scm (kdenlive): [inputs]: Add breeze. [arguments]: In wrap-program phase, add XDG_DATA_DIRS to include the 'share' sub-directory of the package breeze. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri2020-09-141-0/+4
* gnu: Add ripmime.•••* gnu/packages/mail.scm (ripmime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sébastien Lerique2020-09-141-0/+48
* gnu: guix: Update to 846403e.•••* gnu/packages/package-management.scm (guix): Update to 846403e. Ludovic Courtès2020-09-141-3/+3
* services: docker: Fix service definition.•••This is a follow-up to 8422a67dc16af4dd5eb82180463aa7a0b362d5b9. * gnu/services/docker.scm (docker-service-type): Use a composed list for packages in profile-service-type. Efraim Flashner2020-09-141-1/+1
* gnu: maven-compiler-plugin: Don't use unstable tarball.•••* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using git-fetch. Efraim Flashner2020-09-141-5/+6
* gnu: maven-resources-plugin: Don't use unstable tarball.•••* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download using git-fetch. Efraim Flashner2020-09-141-5/+6
* gnu: maven-jar-plugin: Don't use unstable tarball.•••* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using git-fetch. Efraim Flashner2020-09-141-5/+6
* gnu: java-hdrhistogram: Don't use unstable tarball.•••* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using git-fetch. [arguments]: Add phase to make source writable. Efraim Flashner2020-09-141-4/+10
* gnu: r-wgcna: Move to (gnu packages bioconductor).•••This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here. Ricardo Wurmus2020-09-142-38/+40
* gnu: r-fithic: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-26/+26
* gnu: r-hitc: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-hitc): Move from here... * gnu/packages/bioconductor.scm (r-hitc): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-29/+29
* gnu: r-hdf5array: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here... * gnu/packages/bioconductor.scm (r-hdf5array): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-30/+30
* gnu: r-rhdf5lib: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-82/+83
* gnu: r-beachmat: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-beachmat): Move from here... * gnu/packages/bioconductor.scm (r-beachmat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-25/+25
* gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here... * gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-29/+29
* gnu: r-scater: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-scater): Move from here... * gnu/packages/bioconductor.scm (r-scater): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-37/+37
* gnu: r-scran: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-scran): Move from here... * gnu/packages/bioconductor.scm (r-scran): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-43/+43
* gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here... * gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-36/+36
* gnu: r-rgraphviz: Move to (gnu packages bioconductor).•••* gnu/packages/graph.scm (r-rgraphviz): Move from here... * gnu/packages/bioconductor.scm (r-rgraphviz): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-38/+38
* gnu: r-preprocesscore: Move to (gnu packages bioconductor).•••* gnu/packages/statistics.scm (r-preprocesscore): Move from here... * gnu/packages/bioconductor.scm (r-preprocesscore): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-21/+21
* gnu: r-fourcseq: Move to (gnu packages bioconductor).•••* gnu/packages/cran.scm (r-fourcseq): Move from here... * gnu/packages/bioconductor.scm (r-fourcseq): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-142-44/+45
* gnu: r-rgraphviz: Build reproducibly.•••Fixes <https://bugs.gnu.org/43398>. * gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase "make-reproducible". Ricardo Wurmus2020-09-141-0/+10
* gnu: r-quantreg: Update to 5.67.•••* gnu/packages/statistics.scm (r-quantreg): Update to 5.67. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-cowplot: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-09-141-2/+4
* gnu: r-rcpparmadillo: Update to 0.9.900.3.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-ggdendro: Update to 0.1.22.•••* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-stringi: Update to 1.5.3.•••* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-mass: Update to 7.3-53.•••* gnu/packages/statistics.scm (r-mass): Update to 7.3-53. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-diversitree: Update to 0.9-14.•••* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-seurat: Update to 3.2.1.•••* gnu/packages/cran.scm (r-seurat): Update to 3.2.1. [propagated-inputs]: Remove r-ape; add r-matrixstats. Ricardo Wurmus2020-09-141-4/+4
* gnu: r-rfast: Update to 2.0.1.•••* gnu/packages/cran.scm (r-rfast): Update to 2.0.1. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-scatterpie: Update to 0.1.5.•••* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-forecast: Update to 8.13.•••* gnu/packages/cran.scm (r-forecast): Update to 8.13. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-gamlss: Update to 5.2-0.•••* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-parameters: Update to 0.8.5.•••* gnu/packages/cran.scm (r-parameters): Update to 0.8.5. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-systemfonts: Update to 0.3.1.•••* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-dalex: Update to 2.0.•••* gnu/packages/cran.scm (r-dalex): Update to 2.0. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-sf: Update to 0.9-6.•••* gnu/packages/cran.scm (r-sf): Update to 0.9-6. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-deldir: Update to 0.1-29.•••* gnu/packages/cran.scm (r-deldir): Update to 0.1-29. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-shinyjs: Update to 2.0.0.•••* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-09-141-2/+4
* gnu: r-etm: Update to 1.1.1.•••* gnu/packages/cran.scm (r-etm): Update to 1.1.1. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-fields: Update to 11.4.•••* gnu/packages/cran.scm (r-fields): Update to 11.4. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-rnifti: Update to 1.2.2.•••* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2. Ricardo Wurmus2020-09-141-2/+2
* gnu: r-misc3d: Update to 0.9-0.•••* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0. Ricardo Wurmus2020-09-141-2/+2
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