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* gnu: guile-sqlite3: Update to 0.1.1.•••* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.1. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès2020-06-123-69/+3
* git-authenticate: Disallow SHA1 (and MD5) signatures.•••* guix/git-authenticate.scm (commit-signing-key): Add #:disallowed-hash-algorithms and honor it. (authenticate-commit)[recent-commit?]: New variable. Pass #:disallowed-hash-algorithms to 'commit-signing-key'. * tests/git-authenticate.scm ("signed commits, SHA1 signature"): New test. Ludovic Courtès2020-06-122-3/+55
* gnu: Add liblogging.•••* gnu/packages/c.scm (liblogging): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Katherine Cox-Buday2020-06-121-0/+36
* gnu: Add libfastjson.•••* gnu/packages/c.scm (libfastjson): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Katherine Cox-Buday2020-06-121-0/+27
* gnu: Add libestr.•••* gnu/packages/c.scm (libestr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Katherine Cox-Buday2020-06-121-0/+34
* gnu: Add emacs-shell-pop.•••* gnu/packages/emacs-xyz.scm (emacs-shell-pop): New variable Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ryan Desfosses2020-06-121-0/+26
* download: Add more apache mirrors.•••* guix/download.scm (%mirrors): Add more apache mirrors. Efraim Flashner2020-06-121-0/+4
* gnu: Fix apache mirror URIs.•••* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI. * gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient, java-jakarta-oro)[source]: Same. * gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations, maven-wagon-provider-api, maven-artifact)[source]: Same. Efraim Flashner2020-06-123-8/+8
* system: image: Do not produce an HFS tree when building an ISO.•••Use "mbr_only" mode to make sure that no HFS+ tree are generated. * gnu/system/image.scm (system-image): Set MKRESCUE_SED_MODE to "mbr_only". Mathieu Othacehe2020-06-121-8/+17
* gnu: xf86-input-libinput: Reduce closure size.•••* gnu/packages/xorg.scm (xf86-input-libinput)[inputs]: Replace libinput by libinput-minimal. Pierre Neidhardt2020-06-121-1/+1
* guix: lint: Support origins in check-patch-file-names.•••* guix/lint.scm (check-patch-file-names)[starts-with-package-name?]: New procedure, extracted from the existing logic. Using it, add a clause to the match-lambda to handle origin records. Chris Marusich2020-06-111-4/+9
* gnu: icecat: Fix WebGL support.•••* gnu/packages/gnuzilla.scm (icecat): Wrap mesa. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Ekaitz Zarraga2020-06-121-1/+3
* shepherd: 'read-pid-file/container' terminates the whole process group.•••This mirrors a change made in the Shepherd 0.8.0. Previously, upon startup failure, we could have left processes behind. * gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead of PID. Ludovic Courtès2020-06-121-1/+2
* shepherd: Unblock signals in the child process.•••Fixes <https://bugs.gnu.org/41791>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. This change mirrors changes made in the Shepherd 0.8.1, where signals are blocked in the shepherd process in support of 'signalfd'. The regression was introduced with the switch to 0.8.1 in 3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not receive SIGTERM upon 'herd stop SERVICE'. * gnu/build/shepherd.scm <top level>: Autoload (shepherd system). (make-forkexec-constructor/container): Call call to 'sigaction' and 'unblock-signals'. Ludovic Courtès2020-06-121-2/+14
* gnu: Add exercism and dependencies.•••* gnu/packages/education.scm (exercism): New variable. * gnu/packages/patches/exercism-disable-self-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/golang.scm (go-github-com-spf13-afero) (go-github-com-spf13-cast) (go-github-com-spf13-cobra) (go-github-com-spf13-jwalterweatherman) (go-github-com-spf13-viper) (go-github-com-fsnotify-fsnotify) (go-github-com-magiconair-properties) (go-github-com-pelletier-go-toml) (go-github-com-subosito-gotenv) (go-gopkg-in-ini-v1) (go-github-com-mitchellh-mapstructure): New variables. Jakub Kądziołka2020-06-114-2/+398
* gnu: linux-libre: Update to 5.4.46.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@5.7: Update to 5.7.2.•••* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128. (linux-libre-5.7-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@5.6: Remove.•••Users of linux-libre-5.6 should migrate to version 5.7. * gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version) (linux-libre-5.6-pristine-source, linux-libre-5.6-source) (linux-libre-headers-5.6, linux-libre-arm-generic-5.6) (linux-libre-arm64-generic-5.6): Remove variables. Mark H Weaver2020-06-111-51/+0
* gnu: linux-libre@4.19: Update to 4.19.128.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.14: Update to 4.14.184.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.9: Update to 4.9.227.•••* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.4: Update to 4.4.227.•••* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: adns: Update to 1.6.0.•••* gnu/packages/adns.scm (adns): Update to 1.6.0. [source]: Use https. [native-inputs]: Add m4. Efraim Flashner2020-06-111-5/+8
* gnu: subversion: Update to 1.14.0.•••* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI. Efraim Flashner2020-06-111-3/+3
* gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].•••* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field. Ludovic Courtès2020-06-111-0/+15
* packages: 'package-grafts' returns grafts for all the relevant outputs.•••Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test. Ludovic Courtès2020-06-112-43/+62
* gnu: r-with-tests, r-minimal: Update to 4.0.1.•••* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-brms: Update to 2.13.0.•••* gnu/packages/cran.scm (r-brms): Update to 2.13.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-crochet: Update to 2.3.0.•••* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-openmx: Update to 2.17.4.•••* gnu/packages/cran.scm (r-openmx): Update to 2.17.4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-stanheaders: Update to 2.21.0-5.•••* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel. Ricardo Wurmus2020-06-111-2/+5
* gnu: r-semtools: Update to 0.5-3.•••* gnu/packages/cran.scm (r-semtools): Update to 0.5-3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-sem: Update to 3.1-11.•••* gnu/packages/cran.scm (r-sem): Update to 3.1-11. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-emplik: Update to 1.1-1.•••* gnu/packages/cran.scm (r-emplik): Update to 1.1-1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rsvg: Update to 2.1.•••* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-3/+4
* gnu: r-actuar: Update to 3.0-0.•••* gnu/packages/cran.scm (r-actuar): Update to 3.0-0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-gdina: Update to 2.8.0.•••* gnu/packages/cran.scm (r-gdina): Update to 2.8.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-seewave: Update to 2.1.6.•••* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile. Ricardo Wurmus2020-06-111-2/+5
* gnu: r-elasticnet: Update to 1.3.•••* gnu/packages/cran.scm (r-elasticnet): Update to 1.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-showtext: Update to 0.8-1.•••* gnu/packages/cran.scm (r-showtext): Update to 0.8-1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-showtextdb: Update to 3.0.•••* gnu/packages/cran.scm (r-showtextdb): Update to 3.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-abcrlda: Update to 1.0.3.•••* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rgdal: Update to 1.5-10.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-3/+4
* gnu: r-parameters: Update to 0.8.0.•••* gnu/packages/cran.scm (r-parameters): Update to 0.8.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-systemfonts: Update to 0.2.3.•••* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rhpcblasctl: Update to 0.20-137.•••* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-ggraph: Update to 2.0.3.•••* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-europepmc: Update to 0.4.•••* gnu/packages/cran.scm (r-europepmc): Update to 0.4. [propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+7
* gnu: r-msigdbr: Update to 7.1.1.•••* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-bookdown: Update to 0.19.•••* gnu/packages/cran.scm (r-bookdown): Update to 0.19. Ricardo Wurmus2020-06-111-2/+2