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* gnu: QEMU: Don't provide --firmwarepath for user-mode binaries.•••* gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath from the user-mode emulation configure invocation. Marius Bakke2022-12-221-4/+0
* gnu: openvpn: Update to 2.5.8.•••* gnu/packages/vpn.scm (openvpn): Update to 2.5.8. Efraim Flashner2022-12-221-2/+2
* gnu: Add r-bedtorch.•••* gnu/packages/bioinformatics.scm (r-bedtorch): New variable. Ricardo Wurmus2022-12-221-0/+40
* gnu: Add r-rhtslib12.•••* gnu/packages/bioinformatics.scm (r-rhtslib12): New variable. Ricardo Wurmus2022-12-221-0/+27
* gnu: Add wiggletools.•••* gnu/packages/bioinformatics.scm (wiggletools): New variable. Ricardo Wurmus2022-12-221-0/+41
* gnu: xterm: Update to 377.•••* gnu/packages/xorg.scm (xterm): Update to 377. Efraim Flashner2022-12-221-2/+2
* gnu: guile-ssh: Update to 0.16.0.•••* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0. Vagrant Cascadian2022-12-211-2/+2
* gnu: fheroes2: Update to 1.0.0.•••* gnu/packages/games.scm (fheroes2): Update to 1.0.0. Andrew Tropin2022-12-221-2/+2
* gnu: Add python-episcanpy.•••* gnu/packages/bioinformatics.scm (python-episcanpy): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2022-12-221-0/+56
* gnu: Add python-bamnostic.•••* gnu/packages/bioinformatics.scm (python-bamnostic): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2022-12-221-0/+19
* gnu: Add vembrane.•••* gnu/packages/bioinformatics.scm (vembrane): New variable. Ricardo Wurmus2022-12-211-0/+38
* gnu: python-plastid: Update to 0.6.0.•••* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add build phases 'unpack-test-data and 'build-extensions. [inputs]: Add openssl. [native-inputs]: Add test data. Ricardo Wurmus2022-12-211-8/+32
* gnu: python-pysam: Update to 0.20.0.•••* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0. [build-system]: Use pyproject-build-system. Ricardo Wurmus2022-12-211-3/+3
* gnu: htslib: Update to 1.16.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.16. Ricardo Wurmus2022-12-211-2/+2
* gnu: pbbam: Use htslib 1.14.•••* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib with htslib-1.14. Ricardo Wurmus2022-12-211-1/+1
* gnu: Add htslib-1.14.•••* gnu/packages/bioinformatics.scm (htslib-1.14): New variable. Ricardo Wurmus2022-12-211-0/+12
* gnu: Add ocaml5.0-merlin.•••* gnu/packages/ocaml.scm (ocaml5.0-merlin): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+27
* gnu: Add ocaml5.0-dot-merlin-reader.•••* gnu/packages/ocaml.scm (ocaml5.0-dot-merlin-reader): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+13
* gnu: Add ocaml5.0-merlin-lib.•••* gnu/packages/ocaml.scm (ocaml5.0-merlin-lib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+22
* gnu: Update ocaml-merlin-lib to 4.7-414.•••* gnu/packages/ocaml.scm (ocaml-merlin-lib): Update to 4.7-414. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-3/+5
* gnu: Add ocaml5.0-eio-main.•••* gnu/packages/ocaml.scm (ocaml5.0-eio-main): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+21
* gnu: Add ocaml5.0-eio-linux.•••* gnu/packages/ocaml.scm (ocaml5.0-eio-linux): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+23
* gnu: Add ocaml-uring.•••* gnu/packages/ocaml.scm (ocaml-uring): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+32
* gnu: Add ocaml5.0-eio-luv.•••* gnu/packages/ocaml.scm (ocaml5.0-eio-luv): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+15
* gnu: Add ocaml5.0-eio.•••* gnu/packages/ocaml.scm (ocaml5.0-eio): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+37
* gnu: ocaml-mdx: Move inputs to propagated-inputs.•••* gnu/packages/ocaml.scm (ocaml-mdx): Move inputs to propagated-inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-1/+1
* gnu: Add ocaml-bechamel.•••* gnu/packages/ocaml.scm (ocaml-bechamel): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+24
* gnu: Add ocaml5.0-ctypes•••* gnu/packages/ocaml.scm (ocaml5.0-ctypes): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+28
* gnu: Add ocaml-lwt-dllist.•••* gnu/packages/ocaml.scm (ocaml-lwt-dllist): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+21
* gnu: Add ocaml5.0-crowbar.•••* gnu/packages/ocaml.scm (ocaml5.0-crowbar): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+9
* gnu: Update ocaml-odoc to 2.2.0.•••* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-4/+2
* gnu: Add ocaml5.0-ppx-expect.•••* gnu/packages/ocaml.scm (ocaml5.0-ppx-expect): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-1/+24
* gnu: Update ocaml-qcheck to 0.20.•••* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.20. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-3/+3
* gnu: Update ocaml-ppxlib to 0.25.1.•••* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.25.1. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-2/+2
* gnu: Add ocaml5.0-base.•••* gnu/packages/ocaml.scm (ocaml5.0-base): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-1/+24
* gnu: Add ocaml-hmap.•••* gnu/packages/ocaml.scm (ocaml-hmap): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+26
* gnu: Add ocaml-optint.•••* gnu/packages/ocaml.scm (ocaml-optint): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+25
* gnu: Add ocaml-monolith.•••* gnu/packages/ocaml.scm (ocaml-monolith): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+25
* gnu: Add ocaml-psq.•••* gnu/packages/ocaml.scm (ocaml-psq): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+22
* gnu: opam: Use OCaml 4.14 compiled version when building OCaml 5.0 packages.•••* gnu/packages/ocaml.scm (opam)[properties]: Add ocaml5.0-variant. (opam)[propagated-inputs]: Move to inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-4/+6
* guix: ocaml: Add package-with-ocaml5.0.•••* guix/build-system/ocaml.scm (package-with-ocaml5.0) (strip-ocaml5.0-variant): New variables. * gnu/packages/ocaml.scm (ocaml5.0-dune-bootstrap) (ocaml5.0-dune, ocaml5.0-dune-configurator) (ocaml5.0-csexp, ocaml5.0-result): New variables. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-212-4/+77
* gnu: Add ocaml5.0-findlib•••* gnu/packages/ocaml.scm (ocaml5.0-findlib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+7
* gnu: ocaml-findlib: Update to 1.9.5.•••* gnu/packages/ocaml.scm (ocaml-findlib): Update to 1.9.5. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-2/+2
* gnu: Add ocaml-5.0.•••* gnu/packages/ocaml.scm (ocaml-5.0): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> pukkamustard2022-12-211-0/+61
* guix system: Skip initrd modules check when using --target.•••* guix/scripts/system.scm (perform-action): Do not call CHECK-INITRD-MODULES when the %current-target-system parameter is set. Maxim Cournoyer2022-12-211-1/+4
* gnu: julia-imagemetadata: Update to 0.9.8.•••* gnu/packages/julia-xyz.scm (julia-imagemetadata): Update to 0.9.8. [arguments]: Add phase to skip greyscale test. [propagated-inputs]: Remove julia-indirectarrays; add julia-imagebase. [native-inputs]: Add julia-indirectarrays. Efraim Flashner2022-12-211-5/+16
* gnu: julia-paddedviews: Update to 0.5.11.•••* gnu/packages/julia-xyz.scm (julia-paddedviews): Update to 0.5.11. Efraim Flashner2022-12-211-2/+2
* gnu: julia-imageaxes: Update to 0.6.10.•••* gnu/packages/julia-xyz.scm (julia-imageaxes): Update to 0.6.10. [arguments]: Add a phase to skip a greyscale test. [propagated-inputs]: Add julia-imagebase. [native-inputs]: Add julia-aqua and julia-documenter. Efraim Flashner2022-12-211-3/+15
* gnu: julia-graphics: Update to 1.1.2.•••* gnu/packages/julia-xyz.scm (julia-graphics): Update to 1.1.2. Efraim Flashner2022-12-211-2/+2
* gnu: julia-axisarrays: Update to 0.4.6.•••* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.6. Efraim Flashner2022-12-211-2/+2