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* Add (guix self).•••* guix/self.scm: New file. * Makefile.am (MODULES): Add it. * gnu/packages.scm (%distro-root-directory): Rewrite to try different directories. * guix/discovery.scm (guix): Export 'scheme-files'. Ludovic Courtès2018-04-084-3/+621
* gnu: Add 'guix-register'.•••* gnu/packages/package-management.scm (guix-register): New variable. Ludovic Courtès2018-04-081-0/+27
* gexp: 'directory-union' has a #:resolve-collision parameter.•••* guix/gexp.scm (directory-union): Add #:resolve-collision and honor it. Ludovic Courtès2018-04-081-3/+12
* union: Allow callers to choose the collision resolution policy.•••* guix/build/union.scm (warn-about-collision): New procedure. (union-build): Add #:resolve-collision. [resolve-collisions]: Call it. * tests/union.scm ("union-build collision first & last"): New test. Ludovic Courtès2018-04-082-13/+65
* modules: Report the search path in &missing-dependency-error.•••* guix/modules.scm (&missing-dependency-error)[search-path]: New field. (source-module-dependencies): Initialize the 'search-path' field. Ludovic Courtès2018-04-081-2/+5
* tests: Skip 'pivot-root' test on Ubuntu's 4.4 kernels.•••Fixes <https://bugs.gnu.org/25476>. Reported by Paul Garlick <pgarlick@tourbillion-technology.com> and Maria Sidorova <hydromasha@gmail.com>. * tests/syscalls.scm ("pivot-root"): Skip on known-bad Ubuntu kernels. Ludovic Courtès2018-04-081-2/+8
* gnu: grammalecte: Fix build.•••* gnu/packages/dictionaries.scm (grammalecte)[arguments]: Add phase to fix build script. Nicolas Goaziou2018-04-081-0/+13
* gnu: grammalecte: Update to 0.6.3.1.•••* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.3.1. Nicolas Goaziou2018-04-081-2/+2
* gnu: Add emacs-evil-anzu.•••* gnu/packages/emacs.scm (emacs-evil-anzu): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Sohom Bhattacharjee2018-04-071-0/+21
* gnu: git: Fix checksum patch in 'patch-tests'.•••* gnu/packages/version-control.scm (git)[arguments]: In 'patch-tests' phase, use %store-directory instead of '/gnu' to prevent tests failure in case a custom store path is used. Signed-off-by: Marius Bakke <mbakke@fastmail.com> YOANN P2018-04-061-36/+37
* gnu: miniupnpc: Update to 2.0.20180406.•••* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20180406. Marius Bakke2018-04-061-2/+2
* gnu: talloc: Update to 2.1.13.•••* gnu/packages/samba.scm (talloc): Update to 2.1.13. Marius Bakke2018-04-061-2/+2
* gnu: strace: Update to 4.22.•••* gnu/packages/linux.scm (strace): Update to 4.22. [source](uri): Download from home page. Marius Bakke2018-04-061-5/+5
* gnu: ldc, bap: Build with Clang 3.8.•••* gnu/packages/ldc.scm (ldc-bootstrap, ldc): Change LLVM and CLANG to LLVM-3.8 and CLANG-3.8. * gnu/packages/ocaml.scm (bap)[native-inputs]: Change CLANG to CLANG-3.8. [propagated-inputs, inputs]: Change LLVM to LLVM-3.8. Marius Bakke2018-04-062-7/+7
* gnu: llvm, clang: Update to 6.0.0.•••* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 6.0.0. (clang-from-llvm)(patches): Set to empty list. [arguments]: Adjust substitutions depending on major version. (llvm-3.8, clang-runtime-3.8, clang-3.8): New public variables. (clang-3.7, clang-3.6, clang-3.5)(patches): Add 'clang-3.5-libc-search-path.patch'. (clang-3.9.1)(patches): Add 'clang-3.8-libc-search-path.patch'. * gnu/packages/patches/clang-6.0-libc-search-path.patch: New file. * gnu/packages/patches/clang-libc-search-path.patch: Rename to ... * gnu/packages/patches/clang-3.5-libc-search-path.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke2018-04-064-28/+151
* gnu: sambamba: Update to 0.6.7-10-g223fa20.•••* gnu/packages/bioinformatics.scm (sambamba)[source]: Fetch from git. [arguments]: Disable parallel build; rename build phase "place-biod" to "place-biod-and-undead"; add build phase "fix-ldc-version"; adjust phase "unbundle-prerequisites". [native-inputs]: Add python2-minimal; update biod sources; add undead sources. Ricardo Wurmus2018-04-061-15/+36
* gnu: htslib-for-sambamba: Fix build.•••* gnu/packages/bioinformatics.scm (htslib-for-sambamba)[arguments]: Do not inherit htslib arguments. Ricardo Wurmus2018-04-061-6/+4
* gnu: certbot: Update to 0.23.0.•••* gnu/packages/tls.scm (certbot, python-acme): Update to 0.23.0. Leo Famulari2018-04-051-3/+3
* gnu: Add java-native-access-platform.•••* gnu/packages/java.scm (java-native-access-platform): New variable. Julien Lepiller2018-04-051-0/+36
* gnu: Add java-native-access.•••* gnu/packages/java.scm (java-native-access): New variable. Julien Lepiller2018-04-051-0/+68
* gnu: Add java-jakarta-oro.•••* gnu/packages/java.scm (java-jakarta-oro): New variable. Julien Lepiller2018-04-051-0/+34
* gnu: Add java-commons-vfs.•••* gnu/packages/java.scm (java-commons-vfs): New variable. Julien Lepiller2018-04-051-0/+49
* gnu: Add java-commons-httpclient.•••* gnu/packages/java.scm (java-commons-httpclient): New variable. Julien Lepiller2018-04-051-0/+45
* gnu: Add java-commons-bsf.•••* gnu/packages/java.scm (java-commons-bsf): New variable. Julien Lepiller2018-04-051-0/+60
* gnu: Update java-commons-cli to 1.4.•••* gnu/packages/java.scm (java-commons-cli): Update to 1.4. Julien Lepiller2018-04-051-2/+2
* gnu: Add java-jline-2.•••* gnu/packages/java.scm (java-jline-2): New variable. Julien Lepiller2018-04-051-0/+33
* gnu: openssh: Update to 7.7p1.•••* gnu/packages/ssh.scm (openssh): Update to 7.7p1. [arguments]: Set the test suite's working directory in #:make-flags. Leo Famulari2018-04-051-2/+5
* gnu: tiled: Update to 1.1.4.•••* gnu/packages/game-development.scm (tiled): Update to 1.1.4. David Thompson2018-04-051-2/+2
* gnu: Add subdl.•••* gnu/packages/video.scm (subdl): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Pierre Neidhardt2018-04-051-0/+38
* gnu: iptables: Remove trailing newline from description.•••...introduced in be5dc5fb18a4b72977748c5f077062be4e8accbc. * gnu/packages/linux.scm (iptables)[description]: Remove trailing newline. Tobias Geerinckx-Rice2018-04-051-2/+1
* gnu: perl-db-file: Update to 1.841.•••* gnu/packages/databases.scm (perl-db-file): Update to 1.841. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: licensecheck: Update to 3.0.34.•••* gnu/packages/license.scm (licensecheck): Update to 3.0.34. Tobias Geerinckx-Rice2018-04-051-2/+3
* gnu: cppcheck: Update to 1.83.•••* gnu/packages/check.scm (cppcheck): Update to 1.83. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: gama: Update to 1.22.•••* gnu/packages/gps.scm (gama): Update to 1.22. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: lmdb: Update to 0.9.22.•••* gnu/packages/databases.scm (lmdb): Update to 0.9.22. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: getmail: Update to 5.6.•••* gnu/packages/mail.scm (getmail): Update to 5.6. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: jpegoptim: Use HTTPS home page.•••* gnu/packages/image.scm (jpegoptim)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-04-051-1/+1
* gnu: jpegoptim: Update to 1.4.5.•••* gnu/packages/image.scm (jpegoptim): Update to 1.4.5. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: debootstrap: Update to 1.0.95.•••* gnu/packages/debian.scm (debootstrap): Update to 1.0.95. Tobias Geerinckx-Rice2018-04-051-2/+3
* gnu: czmq: Update to 4.1.1.•••* gnu/packages/networking.scm (czmq): Update to 4.1.1. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: musescore: Update to 2.2.1.•••* gnu/packages/music.scm (musescore): Update to 2.2.1. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: mate-themes: Update to 3.22.16.•••* gnu/packages/mate.scm (mate-themes): Update to 3.22.16. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: asymptote: Update to 2.42.•••* gnu/packages/plotutils.scm (asymptote): Update to 2.42. Tobias Geerinckx-Rice2018-04-051-2/+3
* gnu: Use HTTPS for statnet.org home pages.•••* gnu/packages/cran.scm (r-network, r-statnet-common, r-sna)[home-page]: Use HTTPS and canonical domain name. Tobias Geerinckx-Rice2018-04-051-3/+3
* gnu: r-network: Update to 1.13.0.1.•••* gnu/packages/cran.scm (r-network): Update to 1.13.0.1. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: r-lmtest: Update to 0.9-36.•••* gnu/packages/cran.scm (r-lmtest): Update to 0.9-36. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: r-broom: Update to 0.4.4.•••* gnu/packages/cran.scm (r-broom): Update to 0.4.4. Tobias Geerinckx-Rice2018-04-051-3/+3
* gnu: r-ggthemes: Update to 3.4.2.•••* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.2. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: r-caret: Update to 6.0-79.•••* gnu/packages/statistics.scm (r-caret): Update to 6.0-79. Tobias Geerinckx-Rice2018-04-051-2/+2
* gnu: r-viridis: Update to 0.5.1.•••* gnu/packages/statistics.scm (r-viridis): Update to 0.5.1. Tobias Geerinckx-Rice2018-04-051-2/+2