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* gnu: time: Update to 1.8.•••* gnu/packages/time.scm (time): Update to 1.8. [arguments]: Remove custom 'configure phase. Efraim Flashner2017-11-081-14/+3
* gnu: Add glusterfs.•••* gnu/packages/file-systems.scm (glusterfs): New variable. Ricardo Wurmus2017-11-071-0/+78
* gnu: r-prabclus: Update description.•••* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors. Ricardo Wurmus2017-11-071-4/+4
* gnu: r-fdrtool: Update description.•••* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax. Ricardo Wurmus2017-11-071-11/+11
* gnu: Add r-bbmle.•••* gnu/packages/cran.scm (r-bbmle): New variable. Ricardo Wurmus2017-11-071-0/+25
* gnu: Add r-rsofia.•••* gnu/packages/cran.scm (r-rsofia): New variable. Ricardo Wurmus2017-11-071-0/+25
* gnu: Add r-hitc.•••* gnu/packages/bioinformatics.scm (r-hitc): New variable. Ricardo Wurmus2017-11-071-0/+29
* gnu: Add r-fithic.•••* gnu/packages/bioinformatics.scm (r-fithic): New variable. Ricardo Wurmus2017-11-071-0/+24
* gnu: Add r-sushi.•••* gnu/packages/bioinformatics.scm (r-sushi): New variable. Ricardo Wurmus2017-11-071-0/+22
* gnu: Add r-vioplot.•••* gnu/packages/cran.scm (r-vioplot): New variable. Ricardo Wurmus2017-11-071-0/+20
* gnu: Add r-sm.•••* gnu/packages/cran.scm (r-sm): New variable. Ricardo Wurmus2017-11-071-0/+22
* gnu: Add r-gwascat.•••* gnu/packages/bioinformatics.scm (r-gwascat): New variable. Ricardo Wurmus2017-11-071-0/+40
* gnu: Add r-gviz.•••* gnu/packages/bioinformatics.scm (r-gviz): New variable. Ricardo Wurmus2017-11-071-0/+46
* gnu: Add r-gqtlstats.•••* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable. Ricardo Wurmus2017-11-071-0/+54
* gnu: Add r-hardyweinberg.•••* gnu/packages/cran.scm (r-hardyweinberg): New variable. Ricardo Wurmus2017-11-071-0/+31
* gnu: Add r-mice.•••* gnu/packages/cran.scm (r-mice): New variable. Ricardo Wurmus2017-11-071-0/+36
* gnu: Add r-ldblock.•••* gnu/packages/bioinformatics.scm (r-ldblock): New variable. Ricardo Wurmus2017-11-071-0/+31
* gnu: Add r-erma.•••* gnu/packages/bioinformatics.scm (r-erma): New variable. Ricardo Wurmus2017-11-071-0/+36
* gnu: Add r-homo-sapiens.•••* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable. Ricardo Wurmus2017-11-071-0/+32
* gnu: Add r-org-hs-eg-db.•••* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable. Ricardo Wurmus2017-11-071-0/+27
* gnu: Add r-snpstats.•••* gnu/packages/bioinformatics.scm (r-snpstats): New variable. Ricardo Wurmus2017-11-071-0/+27
* gnu: Add r-gqtlbase.•••* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable. Ricardo Wurmus2017-11-071-0/+35
* gnu: Add r-gprofiler.•••* gnu/packages/bioinformatics.scm (r-gprofiler): New variable. Ricardo Wurmus2017-11-071-0/+24
* gnu: Add r-ggbio.•••* gnu/packages/bioinformatics.scm (r-ggbio): New variable. Ricardo Wurmus2017-11-071-0/+52
* gnu: Add r-biovizbase.•••* gnu/packages/bioinformatics.scm (r-biovizbase): New variable. Ricardo Wurmus2017-11-071-0/+41
* gnu: Add r-organismdbi.•••* gnu/packages/bioinformatics.scm (r-organismdbi): New variable. Ricardo Wurmus2017-11-071-0/+32
* gnu: Add r-ensembldb.•••* gnu/packages/bioinformatics.scm (r-ensembldb): New variable. Ricardo Wurmus2017-11-071-0/+44
* gnu: Add r-annotationfilter.•••* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable. Ricardo Wurmus2017-11-071-0/+24
* gnu: Add r-dirichletmultinomial.•••* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable. Ricardo Wurmus2017-11-071-0/+29
* gnu: Add r-complexheatmap.•••* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable. Ricardo Wurmus2017-11-071-0/+30
* gnu: Add r-genomicfiles.•••* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable. Ricardo Wurmus2017-11-071-0/+33
* gnu: bdftopcf: Update to 1.1.•••* gnu/packages/xorg.scm (bdftopcf): Update to 1.1. [native-inputs]: Change from LIBXFONT to LIBXFONT2. Marius Bakke2017-11-071-3/+3
* gnu: feh: Update to 2.22.2.•••* gnu/packages/image-viewers.scm (feh): Update to 2.22.2. Marius Bakke2017-11-071-2/+2
* gnu: gcc-4.7: Resurrect building with gcc-5.4.0.•••* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-4.7): Use it. Jan Nieuwenhuizen2017-11-073-0/+68
* gnu: Add websockify.•••* gnu/packages/web.scm (websockify): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Rutger Helling2017-11-071-0/+31
* gnu: Add python-networkx2.•••* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables. * gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'. * gnu/packages/patches/python-networkx2-reproducible-build.patch: New file. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Gábor Boskovits2017-11-073-0/+49
* gnu: Add python-pydot.•••* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables. Modified-by: Marius Bakke <mbakke@fastmail.com> Gábor Boskovits2017-11-071-0/+28
* gnu: mercurial: Update to 4.4.1.•••* gnu/packages/version-control.scm (mercurial): Update to 4.4.1. Marius Bakke2017-11-071-2/+2
* gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382].•••* gnu/packages/vim.scm (vim): Update to 8.0.1274. Marius Bakke2017-11-071-2/+2
* gnu: notmuch: Update to 0.25.2.•••* gnu/packages/mail.scm (notmuch): Update to 0.25.2. Marius Bakke2017-11-071-2/+2
* gnu: psm: Only use as an input on supported-systems.•••Syntax help supplied by bavier@member.fsf.org * gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input on systems where psm is supported. * gnu/packages/mpi.scm (openmpi)[inputs]: Same. Efraim Flashner2017-11-072-3/+11
* gnu: psm: Limit supported systems.•••* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to i686-linux and x86_64-linux. Efraim Flashner2017-11-071-0/+2
* gnu: gnupg: Update to 2.2.2.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2. Efraim Flashner2017-11-071-2/+2
* gnu: mediainfo: Change order of custom phases.•••* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build directory before executing the autogen script. Efraim Flashner2017-11-071-3/+4
* gnu: linux: Fix kconfig selection.•••* gnu/packages/linux.scm (make-linux-libre): When cross-compiling, "kconfig" field is in native-inputs variable. So config is always #f when cross-compiling linux. Mathieu Othacehe2017-11-071-1/+1
* hydra: Add jobs for all of '%final-inputs'.•••* build-aux/hydra/gnu-system.scm (package->job): Create a 'base.' job when PACKAGE is a member of BASE-PACKAGES. (all-packages)[adjust]: New procedure. Fold over %FINAL-INPUTS and add it to the result. Ludovic Courtès2017-11-071-11/+17
* gnu: openmpi: Add dependency on PSM.•••* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM. Dave Love2017-11-071-0/+1
* gnu: libfabric: Add dependency on PSM.•••* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM. Dave Love2017-11-071-1/+1
* gnu: Add PSM.•••* gnu/packages/linux.scm (psm): New variable. * gnu/packages/patches/psm-arch.patch, gnu/packages/patches/psm-ldflags.patch, gnu/packages/patches/psm-repro.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Dave Love2017-11-075-0/+85
* gnu: diffoscope: Update to 88.•••* gnu/packages/package-management.scm (diffoscope): Update to 88. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Gábor Boskovits2017-11-071-2/+6
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