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* gnu: mercurial: Update to 4.6.2.•••* gnu/packages/version-control.scm (mercurial): Update to 4.6.2. fis trivial2018-10-071-2/+2
* gnu: pd: Update to 0.49-0.•••* gnu/packages/music.scm (pd): Update to 0.49-0. 宋文武2018-10-071-5/+9
* gnu: wcslib: Update to 5.20.•••* gnu/packages/astronomy.scm (wcslib): Update to 5.20. [arguments]: Build parallelly. Tobias Geerinckx-Rice2018-10-061-4/+3
* gnu: git: Update to 2.19.1 [fixes CVE-2018-17456].•••* gnu/packages/version-control.scm (git): Update to 2.19.1. Leo Famulari2018-10-061-3/+3
* gnu: Add ngless.•••* gnu/packages/bioinformatics.scm (ngless): New variable. Ricardo Wurmus2018-10-051-0/+87
* gnu: Add ghc-safeio.•••* gnu/packages/haskell.scm (ghc-safeio): New variable. Ricardo Wurmus2018-10-051-0/+30
* gnu: Add ghc-file-embed.•••* gnu/packages/haskell.scm (ghc-file-embed): New variable. Ricardo Wurmus2018-10-051-0/+21
* gnu: Add ghc-configurator.•••* gnu/packages/haskell.scm (ghc-configurator): New variable. Ricardo Wurmus2018-10-051-0/+43
* gnu: Add ghc-bytestring-lexing.•••* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable. Ricardo Wurmus2018-10-051-0/+21
* gnu: Add ghc-inline-c-cpp.•••* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable. Ricardo Wurmus2018-10-051-0/+36
* gnu: Add ghc-safe-exceptions.•••* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable. Ricardo Wurmus2018-10-051-0/+33
* gnu: Add ghc-inline-c.•••* gnu/packages/haskell.scm (ghc-inline-c): New variable. Ricardo Wurmus2018-10-051-0/+46
* gnu: Add ghc-raw-string-qq.•••* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable. Ricardo Wurmus2018-10-051-0/+25
* gnu: Add ghc-hpack.•••* gnu/packages/haskell.scm (ghc-hpack): New variable. Ricardo Wurmus2018-10-051-0/+45
* gnu: Add ghc-interpolate.•••* gnu/packages/haskell.scm (ghc-interpolate): New variable. Ricardo Wurmus2018-10-051-0/+28
* gnu: Add ghc-conduit-algorithms.•••* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable. Ricardo Wurmus2018-10-051-0/+42
* gnu: Add ghc-pqueue.•••* gnu/packages/haskell.scm (ghc-pqueue): New variable. Ricardo Wurmus2018-10-051-0/+22
* gnu: Add ghc-bzlib-conduit.•••* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable. Ricardo Wurmus2018-10-051-0/+28
* gnu: Add ghc-lzma-conduit.•••* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable. Ricardo Wurmus2018-10-051-0/+31
* gnu: Add ghc-bindings-dsl.•••* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable. Ricardo Wurmus2018-10-051-0/+25
* gnu: Add ghc-stm-conduit.•••* gnu/packages/haskell.scm (ghc-stm-conduit): New variable. Ricardo Wurmus2018-10-051-0/+39
* gnu: Add ghc-lzma.•••* gnu/packages/haskell.scm (ghc-lzma): New variable. Ricardo Wurmus2018-10-051-0/+31
* gnu: Add ghc-cereal-conduit.•••* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable. Ricardo Wurmus2018-10-051-0/+27
* gnu: Add ghc-atomic-write.•••* gnu/packages/haskell.scm (ghc-atomic-write): New variable. Ricardo Wurmus2018-10-051-0/+35
* gnu: Add ghc-chart-cairo.•••* gnu/packages/haskell.scm (ghc-chart-cairo): New variable. Ricardo Wurmus2018-10-051-0/+27
* gnu: Add ghc-cairo.•••* gnu/packages/haskell.scm (ghc-cairo): New variable. Ricardo Wurmus2018-10-051-0/+77
* gnu: ghc-regex: Fix build.•••* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax version checks. Ricardo Wurmus2018-10-051-0/+11
* gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.•••* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove ghc-http-client. Ricardo Wurmus2018-10-051-1/+0
* progress: Fix total size in "@ download-succeeded" traces.•••Fixes a regression introduced in 1d0be47ab680db938ac8da1ee65e1de91e198f67 whereby the total size for directories (coming from substitutes) would be 4KiB. This led the progress bar to go back to the start, typically. * guix/progress.scm (progress-reporter/trace): Add 'total'. In 'start', initialize it. Adjust 'report' to update it. Adjust 'stop' to prefer SIZE as the actual size and then TOTAL. Do not use the size of FILE as the total since that could be 4KiB when FILE is a directory. Ludovic Courtès2018-10-051-3/+8
* gnu: ruby-sass: Update to 3.6.0.•••* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0. [source]: Update sha256. [native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5. Christopher Baines2018-10-051-3/+4
* gnu: Add ruby-mathn.•••* gnu/packages/ruby.scm (ruby-mathn): New variable. Christopher Baines2018-10-051-0/+23
* gnu: ruby-sass-spec: Fix spec expectation.•••This fixes building ruby-sass with Ruby 2.5. * gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to fix the expectation of one of the tests. Also change the comment regarding the tests not being run. Christopher Baines2018-10-051-2/+10
* gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.•••* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test phase to fix a test that fails under Ruby 2.5. Christopher Baines2018-10-051-0/+5
* gnu: ruby-shindo: Remove -rubygems flags.•••These have been removed in Ruby 2.5. * gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to also remove the -rubygems flags. Christopher Baines2018-10-051-6/+9
* gnu: bioruby: Update to 1.5.2.•••This works with Ruby 2.5. * gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2. Christopher Baines2018-10-051-2/+2
* gnu: gnucash-docs: Update to 3.3.•••The documentation on SourceForge is now located in the same directory as the source code. * gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3. Kei Kebreau2018-10-051-5/+3
* gnu: gnucash: Update to 3.3.•••* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Update to 3.3. [source]: Add patch. [arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and 'glib-or-gtk-wrap' phases. Kei Kebreau2018-10-054-13/+81
* gnu: Add bastet.•••* gnu/packages/games.scm (bastet): New public variable. * gnu/packages/patches/bastet-change-source-of-unordered_set.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice2018-10-053-0/+105
* gnu: fdroidserver: Update to 1.0.10.•••* gnu/packages/android.scm (fdroidserver): Update to 1.0.10. Tobias Geerinckx-Rice2018-10-051-2/+2
* gnu: audacity: Don't use unstable tarball.•••* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice2018-10-051-4/+6
* gnu: filezilla: Update to 3.37.4.•••* gnu/packages/ftp.scm (filezilla): Update to 3.37.4. Tobias Geerinckx-Rice2018-10-051-2/+2
* gnu: libfilezilla: Update to 0.14.0.•••* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0. Tobias Geerinckx-Rice2018-10-051-2/+2
* gnu: samtools-0.1: Adjust to match changes in samtools.•••* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make flags. Ricardo Wurmus2018-10-051-2/+2
* gnu: deeptools: Update to 3.1.2.•••* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2. [source]: Fetch from git. [arguments]: Delete reset-gzip-timestamps phase. [inputs]: Add python-plotly. Ricardo Wurmus2018-10-051-7/+14
* gnu: python-pysam: Update to 0.15.1.•••* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1. [source]: Fetch from git. [arguments]: Delete tests requiring internet access; use "invoke". [inputs]: Add curl. Ricardo Wurmus2018-10-051-26/+29
* gnu: python-plotly: Add python-pandas to inputs.•••* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add python-pandas. Ricardo Wurmus2018-10-051-0/+1
* gnu: bcftools: Update to 1.9.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9. [arguments]: Remove obsolete make flags. Ricardo Wurmus2018-10-051-18/+9
* gnu: samtools: Update to 1.9.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.9. [origin]: Remove bundled htslib sources. [arguments]: Remove obsolete make-flags. Ricardo Wurmus2018-10-051-4/+8
* gnu: htslib: Update to 1.9.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.9. Ricardo Wurmus2018-10-051-2/+2
* gnu: icecat: Add fixes from mozilla-esr60 [security fixes].•••Includes fixes for CVE-2018-12386 and CVE-2018-12387. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr60 repository. Mark H Weaver2018-10-041-1/+17