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* Update email address and Savannah handle for Amin Bandali.•••* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address. * build-aux/git-authenticate.scm: Update my Savannah handle. Amin Bandali2020-03-2810-12/+12
* gnu: armadillo: Fix typo in description.•••* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.". Nicolas Goaziou2020-03-281-1/+1
* gnu: KOrganizer: Fix typo in description.•••* gnu/packages/kde-pim.scm (korganizer)[description]: clanedaring -> calendaring. Marius Bakke2020-03-281-1/+1
* gnu: youtube-viewer: Add missing comment.•••This is a follow-up to 315b98b9eb71e1a56de6a49ffbfed0af3c92be7e. * gnu/packages/video.scm (youtube-viewer)[arguments]: Add comment explaining why we don't install the gtk3 variant. Efraim Flashner2020-03-281-0/+2
* Revert "gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default."•••This commit didn't work: https://issues.guix.gnu.org/issue/24076#13 This reverts commit c7af9d0b5ebaa1fdb08ff5d8a56004998bcd8103. Leo Famulari2020-03-283-19/+2
* deploy: Remove use of '~*' in format string.•••...since 'msgfmt' fails to interpret it. Reported by Vagrant Cascadian in <https://lists.gnu.org/archive/html/guix-devel/2020-03/msg00340.html>. See also <https://bugs.gnu.org/37505>. * guix/scripts/deploy.scm (show-what-to-deploy): Use ~d instead of ~* when displaying machines that will be deployed. Marius Bakke2020-03-281-1/+1
* gnu: pagekite: Update to 1.5.0.200327.•••* gnu/packages/networking.scm (pagekite): Update to 1.5.0.200327. Alex Griffin2020-03-281-3/+3
* gnu: python-socksipychain: Update to 2.1.1-1.eb5ee87.•••* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.1-1.eb5ee87. Alex Griffin2020-03-281-22/+25
* gnu: sbcl-cl-containers: Update to 20200212.•••* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 20200212. Pierre Neidhardt2020-03-281-3/+3
* gnu: lollypop: Update to 1.2.32.•••* gnu/packages/gnome.scm (lollypop): Update to 1.2.32. Christopher Baines2020-03-281-4/+3
* gnu: r-curl: Fix patch to respect CURL_CA_BUNDLE.•••Fixes <https://debbugs.gnu.org/40262>. * gnu/packages/cran.scm (r-curl)[arguments]: Ensure CURLOPT_CAINFO actually gets set. Ricardo Wurmus2020-03-271-1/+5
* gnu: grammalecte: Update to 1.8.0.•••* gnu/packages/dictionaries.scm (grammalecte): Update to 1.8.0. Nicolas Goaziou2020-03-271-2/+2
* gnu: fet: Update to 5.44.0.•••* gnu/packages/education.scm (fet): Update to 5.44.0. Nicolas Goaziou2020-03-271-2/+2
* gnu: emacs-flycheck-grammalecte: Update to 1.0.•••* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 1.0. Nicolas Goaziou2020-03-271-10/+10
* gnu: tmate: Update to 2.4.0.•••* gnu/packages/terminals.scm (tmate): Update to 2.4.0. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder2020-03-271-2/+3
* gnu: Neofetch: Update to 7.0.0.•••* gnu/packages/admin.scm (neofetch): Update to 7.0.0. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder2020-03-271-25/+25
* gnu: mailutils: Update to 3.9.•••* gnu/packages/mail.scm (mailutils): Update to 3.9. [arguments]: In 'prepare-test-suite' phase, adjust name of the mda 'testsuite' files. Ludovic Courtès2020-03-271-3/+4
* packages: Use Guile 3.0 for grafts.•••* guix/packages.scm (guile-2.0): Rename to... (guile-for-grafts): ... this, and adjust callers. Refer to 'guile-3.0' instead of 'guile-2.0'. Ludovic Courtès2020-03-271-6/+6
* gnu: guile-next: Update to 3.0.2.•••* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2. * gnu/packages/patches/guile-3.0-crash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2020-03-273-23/+2
* gnu: Add trivial-package-local-nicknames.•••* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames, sbcl-trivial-package-local-nicknames): New variables. Pierre Neidhardt2020-03-271-0/+25
* services/nfs: Replace nfs-version with nfs-versions.•••Instead of accepting a string for just one protocol version accept a list of supported versions. * gnu/services/nfs.scm (<nfs-configuration>)[nfs-version]: Remove field and replace... [nfs-versions]: ...with this new field. (nfs-shepherd-services): Pass as many "--nfs-version" options as there are supported versions. * doc/guix.texi (Network File System): Document nfs-versions. Ricardo Wurmus2020-03-272-15/+16
* gnu: rust: Add 1.39•••* gnu/packages/rust.scm (rust-1.39): New variable. (%cargo-reference-hash): Add a comment explaining the role of the variable. Jakub Kądziołka2020-03-271-0/+46
* gnu: rust: Add 1.38•••All packages are still built with rustc 1.37, but users will see rustc 1.38 in their profiles, and packages that require newer compiler versions will be possible to add. * gnu/packages/rust.scm (rust-1.31): Factor out the patch-command-exec-tests phase to a separate procedure. (patch-command-exec-tests-phase): New procedure. (rust): Rename to rust-1.37, make rust an alias. (rust-1.38): New variable. Jakub Kądziołka2020-03-271-22/+53
* gnu: asymptote: Update to 2.65.•••* gnu/packages/plotutils.scm (asymptote): Update to 2.65. Nicolas Goaziou2020-03-271-2/+2
* gnu: r-multiassayexperiment: Update to 1.12.6.•••* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6. Ricardo Wurmus2020-03-271-2/+2
* gnu: r-locfit: Update to 1.5-9.4.•••* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4. Ricardo Wurmus2020-03-271-2/+2
* gnu: r-class: Update to 7.3-16.•••* gnu/packages/statistics.scm (r-class): Update to 7.3-16. Ricardo Wurmus2020-03-271-2/+2
* gnu: r-xgboost: Update to 1.0.0.2.•••* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2. Ricardo Wurmus2020-03-271-2/+2
* gnu: r-rjava: Update to 0.9-12.•••* gnu/packages/cran.scm (r-rjava): Update to 0.9-12. Ricardo Wurmus2020-03-271-2/+2
* gnu: r-sf: Update to 0.9-0.•••* gnu/packages/cran.scm (r-sf): Update to 0.9-0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-271-3/+5
* gnu: r-bayestestr: Update to 0.5.3.•••* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-271-2/+4
* gnu: r-hdf5r: Update to 1.3.2.•••* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-271-2/+4
* gnu: r-ggally: Update to 1.5.0.•••* gnu/packages/cran.scm (r-ggally): Update to 1.5.0. Ricardo Wurmus2020-03-271-2/+2
* gnu: guix-data-service: Update to 0.0.1-19.d1c243f.•••These changes support the guix-data-service-backup-database and guix-data-service-create-small-backup scripts. These are shell scripts, so require coreutils from the build environment at runtime as well as binaries from postgresql, ephemeralpg and optionally util-linux (for ionice and renice). * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f. [arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the 'install phase to wrap all bin files with some inputs as well. [inputs]: Add util-linux, include ephemeralpg from native-inputs and switch postgresql for postgresql-11. [native-inputs]: Move ephemeralpg to inputs. Christopher Baines2020-03-261-13/+24
* gnu: Add python-json5.•••* gnu/packages/python-xyz.scm (python-json5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun2020-03-261-0/+25
* gnu: Add python-pytest-check-links.•••* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun2020-03-261-0/+28
* vm: Distinguish between success and failure of the guest code.•••Fixes <https://bugs.gnu.org/34276>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]: Produce '/xchg/.exit-status' file upon success. * gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status' once QEMU has completed and respond accordingly. Ludovic Courtès2020-03-262-7/+19
* gnu: Add ROPgadget.•••* gnu/packages/cybersecurity.scm: New file. (ropgadget): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Register the file. Jakub Kądziołka2020-03-262-0/+47
* gnu: java-tomcat: Update to 8.5.53.•••This fixes CVE-2020-1938 ("Ghostcat"). * gnu/packages/web.scm (java-tomcat): Update to 8.5.53. [properties]: Add cpe-name. Björn Höfling2020-03-261-2/+4
* gnu: icu4c: Explicitly add patch flags in replacement package.•••This is to prevent a build failure when this gets merged to 'core-updates' which does not have any patch-flags to inherit. * gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field. Marius Bakke2020-03-261-0/+1
* gnu: help2man: Update to 1.47.13.•••* gnu/packages/man.scm (help2man/latest): Update to 1.47.13. Marius Bakke2020-03-261-2/+2
* gnu: Add python-pywinrm.•••* gnu/packages/python-xyz.scm (python-pywinrm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou2020-03-261-0/+31
* gnu: Add python-requests_ntlm.•••* gnu/packages/python-web.scm (python-requests_ntlm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou2020-03-261-0/+25
* gnu: Add python-ntlm-auth.•••* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou2020-03-261-0/+29
* gnu: Add python-kerberos.•••* gnu/packages/python-crypto.scm (python-kerberos): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou2020-03-261-0/+27
* gnu: Update sambamba to 0.7.1.•••* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1; Remove unneeded undead input. Roel Janssen2020-03-261-19/+6
* gnu: Add 7kaa.•••* gnu/packages/games.scm (7kaa): New variable. Naga Malleswari2020-03-261-0/+33
* gnu: boinc-client: Update to 7.16.5.•••* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5. Efraim Flashner2020-03-261-2/+2
* gnu: boinc-server: Fix build.•••* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl with openssl-1.0, mariadb with mariadb:dev. Efraim Flashner2020-03-261-2/+3
* status: Display synthetic information about profiles being built.•••* guix/status.scm (print-build-event): Add 'profile case. * guix/scripts/package.scm (build-and-use-profile): Remove now redundant message. Ludovic Courtès2020-03-262-5/+9
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