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* gnu: Add r-wmtsa.•••* gnu/packages/cran.scm (r-wmtsa): New variable. Ricardo Wurmus2018-03-021-0/+24
* gnu: Add r-tseries.•••* gnu/packages/cran.scm (r-tseries): New variable. Ricardo Wurmus2018-03-021-0/+25
* gnu: Add r-quantmod.•••* gnu/packages/cran.scm (r-quantmod): New variable. Ricardo Wurmus2018-03-021-0/+24
* gnu: Add r-sapa.•••* gnu/packages/cran.scm (r-sapa): New variable. Ricardo Wurmus2018-03-021-0/+22
* gnu: Add r-ifultools.•••* gnu/packages/cran.scm (r-ifultools): New variable. Ricardo Wurmus2018-03-021-0/+21
* gnu: Add r-splus2r.•••* gnu/packages/cran.scm (r-splus2r): New variable. Ricardo Wurmus2018-03-021-0/+22
* gnu: Add r-leaps.•••* gnu/packages/cran.scm (r-leaps): New variable. Ricardo Wurmus2018-03-021-0/+20
* gnu: Add r-ttr.•••* gnu/packages/cran.scm (r-ttr): New variable. Ricardo Wurmus2018-03-021-0/+25
* gnu: Add r-rbiofabric.•••* gnu/packages/graph.scm (r-rbiofabric): New variable. Ricardo Wurmus2018-03-021-1/+28
* gnu: Add r-sna.•••* gnu/packages/cran.scm (r-sna): New variable. Ricardo Wurmus2018-03-021-0/+24
* gnu: Add r-statnet-common.•••* gnu/packages/cran.scm (r-statnet-common): New variable. Ricardo Wurmus2018-03-021-0/+20
* gnu: Add r-network.•••* gnu/packages/cran.scm (r-network): New variable. Ricardo Wurmus2018-03-021-0/+20
* gnu: nghttp2: Update to 1.31.0.•••* gnu/packages/web.scm (nghttp2): Update to 1.31.0. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: libpsl: Update to 0.20.1.•••* gnu/packages/web.scm (libpsl): Update to 0.20.1. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: zerofree: Update to 1.1.1.•••* gnu/packages/linux.scm (zerofree): Update to 1.1.1. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: python-webencodings: Fix typo in description.•••* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo. Tobias Geerinckx-Rice2018-03-021-1/+1
* gnu: delta: Remove redundant code.•••* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P calls. Tobias Geerinckx-Rice2018-03-021-3/+1
* gnu: perl-mozilla-ca: Update to 20180117.•••* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: perl-test-harness: Update to 3.41.•••* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: highlight: Don't hard-code Lua version.•••* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the Lua prefix programatically instead of hard-coding it. Tobias Geerinckx-Rice2018-03-021-1/+3
* gnu: highlight: Update to 3.42.•••* gnu/packages/pretty-print.scm (highlight): Update to 3.42. Tobias Geerinckx-Rice2018-03-021-5/+5
* gnu: ghc-abstract-deque: Fix typos in description.•••* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos. Tobias Geerinckx-Rice2018-03-021-3/+3
* gnu: qscintilla: Use HTTPS home page.•••* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-03-021-1/+1
* gnu: fortify-headers: Update to 0.9.•••* gnu/packages/suckless.scm (fortify-headers): Update to 0.9. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: fossil: Update phase style.•••* gnu/packages/version-control.scm (fossil)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice2018-03-021-6/+7
* gnu: gnome-mpv: Update to 0.14.•••* gnu/packages/video.scm (gnome-mpv): Update to 0.14. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: ath9k-htc-firmware: Use INSTALL-FILE.•••* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute INSTALL-FILE for COPY-FILE with MKDIR-P. Tobias Geerinckx-Rice2018-03-021-4/+1
* gnu: ovmf: Update phase style.•••* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice2018-03-021-4/+7
* gnu: ovmf: Use HTTPS home page.•••* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-03-021-1/+1
* gnu: b43-tools: Use HTTPS home page.•••* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-03-021-1/+1
* gnu: b43-tools: Update phase style.•••* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE for SYSTEM* and FOR-EACH for EVERY, and end phases with #t. Tobias Geerinckx-Rice2018-03-021-9/+10
* gnu: b43-tools: Update to 0.0.0-1.27892ef.•••* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef. [version]: Use our standard versioning scheme. Tobias Geerinckx-Rice2018-03-021-6/+7
* gnu: Update (gnu packages python-web) phase styles.•••* gnu/packages/python-web.scm (python-openid, python-terminado) (python-geventhttpclient, python-cachecontrol, python-webencodings) (python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice2018-03-021-8/+16
* gnu: python-flask-script: Update to 2.0.6.•••* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: python-htmlmin: Update to 0.1.12.•••* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12. Tobias Geerinckx-Rice2018-03-021-3/+3
* gnu: python-s3transfer: Update to 0.1.13.•••* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: python-webtest: Update to 2.0.29.•••* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: python-ndg-httpsclient: Update to 0.4.4.•••* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4. Tobias Geerinckx-Rice2018-03-021-2/+2
* gnu: python-cssutils: Update to 1.0.2.•••* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2. Tobias Geerinckx-Rice2018-03-021-4/+4
* gnu: python-flask-babel: Update to 0.11.2.•••* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2. Tobias Geerinckx-Rice2018-03-021-2/+2
* guix system: Check for the lack of modules in the initrd.•••* guix/scripts/system.scm (check-mapped-devices): Take an OS instead of a list of <mapped-device>. Pass #:needed-for-boot? and #:initrd-modules to CHECK. (check-initrd-modules): New procedure. (perform-action): Move 'check-mapped-devices' call first. Add call to 'check-initrd-modules'. * gnu/system/mapped-devices.scm (check-device-initrd-modules): New procedure. (check-luks-device): Add #:initrd-modules and #:needed-for-boot?. Use them to call 'check-device-initrd-modules'. Ludovic Courtès2018-03-022-24/+96
* system: Add 'initrd-modules' field.•••* gnu/system.scm (<operating-system>)[initrd-modules]: New field. (operating-system-initrd-file): Pass #:linux-modules to 'make-initrd'. * gnu/system/linux-initrd.scm (default-initrd-modules): New procedure. (%base-initrd-modules): New macro. (base-initrd): Add #:linux-modules and honor it. * gnu/system/install.scm (embedded-installation-os): Use 'initrd-modules' instead of 'initrd'. * gnu/tests/install.scm (%raid-root-os): Likewise. * doc/guix.texi (operating-system Reference): Add 'initrd-modules'. (Initial RAM Disk): Document it. Adjust example to not use #:extra-modules. Ludovic Courtès2018-03-025-31/+68
* linux-initrd: Separate file system module logic.•••* gnu/system/linux-initrd.scm (vhash, lookup-procedure): New macros. (file-system-type-modules, file-system-modules): New procedures. (base-initrd)[cifs-modules, virtio-9p-modules]: Remove. [file-system-type-predicate]: Remove. Use 'file-system-modules' instead of 'find' + 'file-system-type-predicate'. Ludovic Courtès2018-03-021-24/+36
* linux-modules: Add 'device-module-aliases' and related procedures.•••* gnu/build/linux-modules.scm (readlink*, stat->device-major) (stat->device-minor): New procedures. (%not-slash): New variable. (read-uevent, device-module-aliases, read-module-aliases) (current-alias-file, known-module-aliases, matching-modules): New procedures. Ludovic Courtès2018-03-021-1/+158
* Add (guix glob).•••* guix/glob.scm, tests/glob.scm: New files. * Makefile.am (MODULES): Add guix/glob.scm. (SCM_TESTS): Add tests/glob.scm. Ludovic Courtès2018-03-023-1/+158
* environment: Add --user.•••This change allows overriding the home directory of all filesystem mappings to help hide the identity of the calling user in a container. * doc/guix.texi (Invoking guix environment)[--container]: Mention --user. [--user]: Add item. * guix/scripts/environment.scm (show-help): Add --user. (%options): Add --user. (launch-environment/container) Add 'user' parameter. Update doc. Override 'user-mappings' using 'override-user-mappings'. Consider override for chdir. (mock-passwd, user-override-home, overrid-euser-dir): New procedures. (guix-environment): Disallow --user without --container. Provide user to 'launch-environment/container'. * tests/guix-environment.sh: Add user test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mike Gerwitz2018-03-023-29/+138
* environment: Add --link-profile.•••This change is motivated by attempts to run programs (like GNU IceCat) within containers. The 'fontconfig' program, for example, is configured explicitly to check ~/.guix-profile for additional fonts. There were no existing container tests in 'tests/guix-environment.sh', but I added one anyway for this change. * doc/guix.texi (Invoking guix environment): Add '--link-profile'. * guix/scripts/environment.scm (show-help): Add '--link-profile'. (%options): Add 'link-profile' as '#\P', assigned to 'link-profile?'. (link-environment): New procedure. (launch-environment/container): Use it when 'link-profile?'. [link-profile?]: New parameter. (guix-environment): Leave when '--link-prof' but not '--container'. Add '#:link-profile?' argument to 'launch-environment/container' application. * tests/guix-environment-container.sh: New '--link-profile' test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mike Gerwitz2018-03-023-8/+70
* gnu: icecat: Add more fixes from upstream mozilla-esr52.•••* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. Mark H Weaver2018-03-021-1/+15
* gnu: icecat: Update to 52.6.0-gnu1.•••* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1. [source]: Remove patches that are no longer needed. * gnu/packages/patches/icecat-bug-1348660-pt5.patch, gnu/packages/patches/icecat-bug-1414945.patch, gnu/packages/patches/icecat-bug-1415133.patch, gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Mark H Weaver2018-03-026-1142/+2
* gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].•••* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8. Leo Famulari2018-03-011-2/+2