| Commit message (Expand) | Author | Age | Files | Lines |
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| ... | |
| | | * | | | gnu: python2-futures: Update to 3.2.0.•••* gnu/packages/python.scm (python2-futures): Update to 3.2.0.
| Marius Bakke | 2018-11-24 | 1 | -2/+2 |
| | | * | | | gnu: python2-futures: Disable tests.•••* gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
| Marius Bakke | 2018-11-24 | 1 | -1/+9 |
| | | * | | | gnu: python-pycurl: Fix FTBFS from 7b844100464633db5455a3931858bb57c9e529e6.•••* gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase
'configure-tls-backend'.
| Marius Bakke | 2018-11-24 | 1 | -1/+9 |
| | | * | | | gnu: ledger: Fix build with Boost >= 1.68.•••* gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
| Marius Bakke | 2018-11-24 | 1 | -0/+7 |
| | | * | | | gnu: mosaik: Fix FTBFS from b90289dadc8ee15848ce911a2bdcd3ae8302d58c.•••* gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
| Marius Bakke | 2018-11-24 | 1 | -0/+1 |
| | | * | | | gnu: python-cheetah: Update to 3.1.0.•••* gnu/packages/python.scm (python2-cheetah): Rename to ...
(python-cheetah): ... this. Update to 3.1.0.
[arguments]: Add custom 'check' phase.
[propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN.
(python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
| Marius Bakke | 2018-11-24 | 1 | -7/+40 |
| | | * | | | gnu: python2-cheetah: Update home page.•••* gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
| Marius Bakke | 2018-11-24 | 1 | -1/+1 |
| | | * | | | gnu: rust: Don't depend on 'git'.•••* gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT.
(rust-1.20)[arguments]: Disable Cargo tests that require git.
(rust-1.26)[arguments]: Likewise.
| Marius Bakke | 2018-11-24 | 1 | -2/+13 |
| | | * | | | gnu: mariadb: Update to 10.1.37 [security fixes].•••This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251. See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.
* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
| Marius Bakke | 2018-11-24 | 1 | -2/+2 |
| | | * | | | Merge branch 'master' into core-updates | Marius Bakke | 2018-11-24 | 36 | -104/+2666 |
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| | | * | | | | gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.•••* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'. Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
| Ludovic Courtès | 2018-11-23 | 1 | -16/+17 |
| | | * | | | | gnu: pigx-scrnaseq: Use latest snakemake.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4
with snakemake.
| Ricardo Wurmus | 2018-11-23 | 1 | -1/+1 |
| | | * | | | | gnu: pigx-bsseq: Use latest snakemake.•••* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4
with snakemake.
| Ricardo Wurmus | 2018-11-23 | 1 | -1/+1 |
| | | * | | | | gnu: pigx-chipseq: Use latest snakemake.•••* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4
with snakemake.
| Ricardo Wurmus | 2018-11-23 | 1 | -1/+1 |
| | | * | | | | gnu: python-gevent: Update to 1.3.7.•••* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
| Ricardo Wurmus | 2018-11-23 | 1 | -4/+8 |
| | | * | | | | gnu: Add python-objgraph.•••* gnu/packages/python.scm (python-objgraph): New variable.
| Ricardo Wurmus | 2018-11-23 | 1 | -0/+24 |
| | | * | | | | gnu: python-loompy: Remove python-typing.•••* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
| Ricardo Wurmus | 2018-11-23 | 1 | -2/+1 |
| | | * | | | | gnu: podofo: Add patch to fix build.•••* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
| Ricardo Wurmus | 2018-11-22 | 3 | -1/+22 |
| | | * | | | | gnu: jalv: Build with python-2.•••* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
| Efraim Flashner | 2018-11-22 | 1 | -0/+1 |
| | | * | | | | gnu: python-scikit-learn: Update to 0.20.1.•••* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files. Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
| Marius Bakke | 2018-11-22 | 3 | -53/+8 |
| | | * | | | | Merge branch 'master' into core-updates | Marius Bakke | 2018-11-22 | 16 | -108/+291 |
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| | | * | | | | | gnu: python-tblib: Fix test failure with Python 3.7.•••* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
| Marius Bakke | 2018-11-22 | 1 | -0/+8 |
| | | * | | | | | gnu: python-numpy: Update to 1.15.4.•••* gnu/packages/python.scm (python-numpy): Update to 1.15.4.
| Marius Bakke | 2018-11-21 | 1 | -2/+2 |
| | | * | | | | | Merge remote-tracking branch 'origin/master' into core-updates | Efraim Flashner | 2018-11-21 | 22 | -87/+1132 |
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| | | * | | | | | | gnu: libbytesize: Make .mo file builds reproducible.•••* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New
fields.
[arguments]: Add #:configure-flags and #:phases.
| Ludovic Courtès | 2018-11-21 | 1 | -5/+38 |
| | | * | | | | | | gnu: emacs-pdf-tools: Fix build with recent Poppler.•••* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès | 2018-11-21 | 3 | -1/+44 |
| | | * | | | | | | gnu: emacs-pdf-tools: Use 'git-fetch'.•••* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to
GIT-FETCH.
[arguments]: In 'emacs-patch-variables' phase, make files writable.
| Ludovic Courtès | 2018-11-21 | 1 | -7/+8 |
| | | * | | | | | | gnu: casync: Fix build with glibc 2.28.•••* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès | 2018-11-21 | 3 | -1/+30 |
| | | * | | | | | | gnu: ntk: Don't use bundled waf.•••* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf.
[arguments]: Add custom phase to replace vendored waf.
| Efraim Flashner | 2018-11-21 | 1 | -1/+8 |
| | | * | | | | | | gnu: python-waf: Use a proper directory structure.•••Fixes <https://bugs.gnu.org/25634>.
* gnu/packages/python.scm (python-waf): Replace custom 'install phase to
install "waf" binary into the bin directory. Remove the 'wrap phase.
* gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase
accordingly.
| Efraim Flashner | 2018-11-21 | 2 | -4/+8 |
| | | * | | | | | | gnu: python-astroid: Update to 2.0.4.•••* gnu/packages/python.scm (python-astroid): Update to 2.0.4.
[source]: Switch to pypi source.
[native-inputs]: Add python-dateutil, python-nose, python-pytest,
python-pytest-runner.
[arguments]: Add phase to remove spurious test failure. Update custom
'check phase.
(python2-astroid): Update to 1.6.5.
[source]: Use pypi source.
[arguments]: Add phase to remove spurious test failure.
| Efraim Flashner | 2018-11-21 | 1 | -14/+46 |
| | | * | | | | | | Merge branch 'master' into core-updates | Marius Bakke | 2018-11-20 | 58 | -1428/+4688 |
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| | | * | | | | | | | gnu: hurd: Build against glibc 2.28.•••Version 2.28 of glibc is the first in a long time that fully supports
GNU/Hurd. This change updates the Hurd and Mach to provide the features
glibc 2.28 expects and adjusts the cross-compilation tool chain for
"i586-pc-gnu".
* gnu/packages/base.scm (glibc/linux): Rename to...
(glibc): ... this.
[propagated-inputs]: Add 'hurd-target?' case.
[arguments]: Use '--disable-werror' when 'hurd-target?'. Add
'augment-libc.so' phase when 'hurd-target?'.
[native-inputs]: Add MIG and PERL when 'hurd-target?'.
(glibc/hurd, glibc-for-target): Remove
(glibc/hurd-headers): Inherit from GLIBC, not GLIBC/HURD.
[arguments]: Remove "--enable-obsolete-rpc" configure flag and
'patch-configure-script' phase.
* gnu/packages/cross-base.scm (cross-kernel-headers)[xglibc/hurd-headers]:
Move 'set-cross-headers-path' after 'unpack'.
* gnu/packages/cross-base.scm (cross-libc)[cross-libc-for-target]:
Remove.
Pass "--disable-werror" when TARGET matches 'hurd-triplet?'.
* gnu/packages/hurd.scm (hurd-target?, patch-url): New procedures.
(gnumach-headers)[source](patches, modules, snippet): New fields.
(hurd-headers): Use Git commit 98b3390.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
[arguments]: Add "ac_cv_func_*" configure flags.
(hurd-minimal)[native-inputs]: Remove.
[arguments]: In 'build' phase, build "include/assert-backtrace.h"
first.
| Ludovic Courtès | 2018-11-18 | 3 | -155/+138 |
| | | * | | | | | | | gnu: spice: Run tests sequentially.•••* gnu/packages/spice.scm (spice)[arguments]: Add #:parallel-tests?.
| Ludovic Courtès | 2018-11-18 | 1 | -0/+4 |
| | | * | | | | | | | gnu: qt@5: Fix build failure on glibc 2.28.•••* gnu/packages/patches/qt-5-renameat2.patch: New file.
* gnu/packages/qt.scm (qt)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès | 2018-11-18 | 3 | -1/+38 |
| | | * | | | | | | | gnu: linkchecker: Use 'git-file-name' for the source.•••* gnu/packages/web.scm (linkchecker)[source]: Add missing 'file-name'
field.
| Efraim Flashner | 2018-11-18 | 1 | -0/+1 |
| | | * | | | | | | | gnu: python-pytest-localserver: Update to 0.5.0.•••* gnu/packages/check.scm (python-pytest-localserver): Update to 0.5.0.
| Efraim Flashner | 2018-11-18 | 1 | -6/+6 |
| | | * | | | | | | | gnu: python-pytest-localserver: Fix test suite.•••* gnu/packages/check.scm (python-pytest-localserver): Replace custom
'check phase.
| Efraim Flashner | 2018-11-18 | 1 | -3/+3 |
| | | * | | | | | | | gnu: libgtextutils: Re-instate custom bootstrap phase.•••The source lacks a standard bootstrap script so the bootstrap phase is
skipped otherwise.
* gnu/packages/textutils.smc (libgtextutils)[arguments]: Replace
'bootstrap phase with upstream's bootstrap phase.
| Efraim Flashner | 2018-11-18 | 1 | -0/+5 |
| | | * | | | | | | | gnu: nss: Make tests deterministic.•••Tests would fail once certificates had expired, along these lines:
chains.sh: Verifying certificate(s) PayPalEE.cert with flags -d AllDB -pp -o OID.2.16.840.1.114412.1.1
vfychain -d AllDB -pp -vv -o OID.2.16.840.1.114412.1.1 /tmp/guix-build-nss-3.39.drv-0/nss-3.39/nss/tests/libpkix/certs/PayPalEE.cert
Chain is bad!
PROBLEM WITH THE CERT CHAIN:
CERT 0. PayPalEE :
ERROR -8181: Peer's Certificate has expired.
Returned value is 1, expected result is pass
Using 'faketime' allows us to get deterministic results.
* gnu/packages/gnuzilla.scm (nss)[arguments]: In 'check' phase, run
'all.sh' under 'faketime'.
[native-inputs]: Add LIBFAKETIME.
| Ludovic Courtès | 2018-11-17 | 1 | -2/+9 |
| | | * | | | | | | | gnu: Add libfaketime.•••* gnu/packages/check.scm (libfaketime): New variable.
| Ludovic Courtès | 2018-11-17 | 1 | -1/+41 |
| | | * | | | | | | | gnu: bioinformatics: Return #t from all phases and snippets.•••* gnu/packages/bioinformatics.scm (bamtools, ribotaper, bioawk)
(codingquarry, fraggenescan, minced, pplacer, star, subread, sailfish)
(salmon): Return #t from all phases and snippets, use 'invoke' where
appropriate, and remove vestigal plumbing.
| Mark H Weaver | 2018-11-14 | 1 | -16/+31 |
| | | * | | | | | | | gnu: databases: Return #t from all phases.•••* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
| Mark H Weaver | 2018-11-14 | 1 | -66/+71 |
| | | * | | | | | | | gnu: compression: Return #t from all phases.•••* gnu/packages/compression.scm (perl-compress-raw-zlib, java-snappy)
(java-iq80-snappy, pzstd, java-tukaani-xz): Return #t from all phases.
| Mark H Weaver | 2018-11-14 | 1 | -6/+11 |
| | | * | | | | | | | gnu: check: Return #t from all phases.•••* gnu/packages/check.scm (cmdtest, python-pytest-cov, python-fixtures)
(python-pytest-localserver, python-pytest-flakes)
(python2-coverage-test-runner, python-pylint, python-behave-web-api):
Return #t from all phases, and use invoke where appropriate.
| Mark H Weaver | 2018-11-14 | 1 | -13/+14 |
| | | * | | | | | | | gnu: audio: Return #t from all phases.•••* gnu/packages/audio.scm (clalsadrv, jack-2, libsbsms, zita-convolver)
(zita-resampler, zita-alsa-pcmi, gsm, cava): Return #t from all phases.
(ladspa): Use 'modify-phases'. Return #t from all phases.
| Mark H Weaver | 2018-11-14 | 1 | -24/+36 |
| | | * | | | | | | | gnu: xorg: Return #t from all phases.•••* gnu/packages/xorg.scm (xcompmgr)
* gnu/packages/xdisorg.scm (xdotool, scrot, unclutter, xscreensaver)
(tint2, nxbelld, xautolock): Return #t from all phases.
| Mark H Weaver | 2018-11-14 | 2 | -5/+8 |
| | | * | | | | | | | gnu: xml: Return #t from all phases.•••* gnu/packages/xml.scm (python-libxml2, perl-xml-sax, xlsx2csv, libxls)
(java-kxml2): Return #t from all phases.
| Mark H Weaver | 2018-11-14 | 1 | -5/+8 |
| | | * | | | | | | | gnu: video: Return #t from all phases.•••* gnu/packages/video.scm (youtube-dl-gui, avidemux, xvid, twitchy, aegisub):
Return #t from all phases, use invoke where appropriate, and remove vestigial
plumbing.
| Mark H Weaver | 2018-11-14 | 1 | -49/+53 |
| | | * | | | | | | | gnu: perl: Return #t from all phases.•••* gnu/packages/gd.scm (perl-gd-securityimage)
* gnu/packages/libevent.scm (perl-ev)
* gnu/packages/markup.scm (perl-text-markdown-discount)
* gnu/packages/perl-check.scm (perl-test2-bundle-extended)
* gnu/packages/perl.scm (perl-digest-md5, perl-encode-hanextra)
(perl-ipc-run, perl-pathtools)
* gnu/packages/photo.scm (perl-image-exiftool): Return #t from all phases.
| Mark H Weaver | 2018-11-14 | 5 | -8/+13 |
