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* gnu: linux-libre: Validate that the cleaned up tarball is free of blobs.•••* gnu/packages/linux.scm (make-linux-libre-source): Call the deblob-check script on the generated tarball archive with the --use-awk and --list-blobs options. Maxim Cournoyer2020-09-041-1/+8
* gnu: make-linux-libre-source: Set output port buffering to line mode.•••* gnu/packages/linux.scm (make-linux-libre-source): Set output port buffering to line mode via setvbuf. Remove the ad-hoc calls to force-output. Maxim Cournoyer2020-09-041-4/+3
* gnu: texlive-logreq: Correct synopsis.•••* gnu/packages/tex.scm (texlive-logreq)[synopsis]: Correct. Paul Garlick2020-09-041-1/+1
* gnu: r-mnormt: Update to 2.0.2.•••* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.2. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-rfast: Update to 2.0.0.•••* gnu/packages/cran.scm (r-rfast): Update to 2.0.0. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-systemfonts: Update to 0.3.0.•••* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.0. [propagated-inputs]: Add r-cpp11. Ricardo Wurmus2020-09-041-2/+4
* gnu: r-xgboost: Update to 1.2.0.1.•••* gnu/packages/cran.scm (r-xgboost): Update to 1.2.0.1. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-ingredients: Update to 2.0.•••* gnu/packages/cran.scm (r-ingredients): Update to 2.0. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-xmlparsedata: Update to 1.0.4.•••* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.4. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-rnifti: Update to 1.2.1.•••* gnu/packages/cran.scm (r-rnifti): Update to 1.2.1. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-trend: Update to 1.1.3.•••* gnu/packages/cran.scm (r-trend): Update to 1.1.3. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-ttr: Update to 0.24.2.•••* gnu/packages/cran.scm (r-ttr): Update to 0.24.2. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-cicero: Update to 1.6.2.•••* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-mixomics: Update to 6.12.2.•••* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-atacseqqc: Update to 1.12.4.•••* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-gkmsvm: Update to 0.81.0.•••* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0. Ricardo Wurmus2020-09-041-2/+2
* gnu: r-chippeakanno: Update to 3.22.3.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3. Ricardo Wurmus2020-09-041-2/+2
* gnu: gmic: Update to 2.9.2.•••* gnu/packages/image-processing.scm (gmic): Update to 2.9.2. Tobias Geerinckx-Rice2020-09-041-2/+2
* gnu: cifs-utils: Update to 6.11 [fixes CVE-2020-14342].•••* gnu/packages/samba.scm (cifs-utils): Update to 6.11. Tobias Geerinckx-Rice2020-09-041-2/+2
* gnu: python-paramiko: Update to 2.7.2.•••* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.2. Tobias Geerinckx-Rice2020-09-041-3/+2
* gnu: Add texlive-logreq.•••* gnu/packages/tex.scm (texlive-logreq): New variable. Paul Garlick2020-09-041-0/+33
* gnu: fpc: Fix reproducibility problem.•••* gnu/packages/pascal.scm (fpc)[arguments]: Add 'patch-release-date' to replace a build timestamp with the release date instead. Eric Bavier2020-09-041-1/+14
* gnu: guix-jupyter: Fix compilation with Guile-JSON >= 4.3.x.•••Reported by wehlutyk on #guix. * gnu/packages/package-management.scm (guix-jupyter)[source]: Avoid 'define-json-mapping' name clash with Guile-JSON. Ludovic Courtès2020-09-041-0/+9
* gnu: r-httpuv: Unvendor libuv.•••* gnu/packages/cran.scm (r-httpuv) [source]: Remove bundled libuv, add patch. [arguments] Rewrite header locations, fix pipe server issue. [inputs] Add libuv. * gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun2020-09-043-1/+91
* gnu: taglib: Update to 1.12-beta-1 [security fixes].•••This switches to a yet unreleased version of taglib, to make sure long standings issues and CVEs are covered until a proper release is made upstream. Among these, we have: - CVE-2017-12678 - CVE-2018-11439 - https://github.com/taglib/taglib/issues/864 * gnu/packges/mp3.scm (taglib): Update to 1.12-beta-1. [source]: Switch to using git-fetch. Pierre Langlois2020-09-041-6/+9
* gnu: node: Update 10.22.0.•••* gnu/packages/node.scm (node): Update to 10.22.0. [inputs]: Replace nghttp2 with nghttp2-1.41. Pierre Langlois2020-09-041-3/+4
* gnu: Remove emacs-seq package.•••It is included with emacs and installing it alongside emacs 27 causes issues. Fixes <https://bugs.gnu.org/43138>. * gnu/packages/emacs-xyz.scm (emacs-bugs-hunter)[propagated-inputs]: Remove. (emacs-erc-status-sidebar)[propagated-inputs]: Remove. (emacs-psc-ide)[propagated-inputs]: Remove emacs-seq. (emacs-biblio)[propagated-inputs]: Remove emacs-seq. (emacs-seq): Delete variable. (emacs-flycheck-haskell)[propagated-inputs]: Remove emacs-seq. Pierre Langlois2020-09-041-26/+2
* gnu: emacs-auctex: Configure executable paths.•••* gnu/packages/emacs-xyz.scm (emacs-auctex): Configure absolute paths to ghostscript and texlive executables. [inputs]: Add ghostscript. Arun Isaac2020-09-041-1/+18
* gnu: Add emacs-org-edna.•••* gnu/packages/emacs-xyz.scm (emacs-org-edna): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Morgan Smith2020-09-041-0/+23
* gnu: txr: Update to 243.•••* gnu/packages/lisp.scm (txr): Update to 243. Guillaume Le Vaillant2020-09-041-2/+2
* gnu: kdenlive: Add ffmpeg to input list•••* gnu/packages/kde.scm (kdenlive): Add ffmpeg to inputs and wrap the final binary accordingly to have ffmpeg in it's PATH. [inputs]: Add ffmpeg. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri2020-09-041-0/+4
* .guix-authorizations: Add planglois to the committers.•••* .guix-authorizations: Add planglois. Ludovic Courtès2020-09-041-0/+3
* gnu: darktable: Add dependency on libavif, ocl-icd.•••* gnu/packages/photo.scm (darktable)[inputs]: Add libavif, ocl-icd. [arguments]: Set LD_LIBRARY_PATH for OpenCL. [supported-systems]: Remove i686 which is not supported anymore. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego2020-09-041-10/+16
* gnu: darktable: Update to 3.2.1.•••* gnu/packages/photo.scm (darktable): Update to 3.2.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego2020-09-041-14/+16
* doc: Document 'file-system-label' and 'uuid'.•••* doc/guix.texi (File Systems): Document 'file-system-label' and 'uuid'. Ludovic Courtès2020-09-041-0/+36
* doc: Syntax highlighting now handles @var within @lisp.•••* doc/build.scm (syntax-highlighted-html)[build](concatenate-pieces): Handle @var{name}. Ludovic Courtès2020-09-041-0/+2
* doc: Balance parens in R Shiny example.•••* doc/guix.texi (Miscellaneous Services): Balance parens in R Shiny example. Ludovic Courtès2020-09-041-3/+2
* gnu: php: Update to 7.4.10.•••* gnu/packages/php.scm (php): Update to 7.4.10. Tobias Geerinckx-Rice2020-09-041-2/+2
* gnu: liblinphone: Add installation of man pages.•••* gnu/packages/linphone.scm (liblinphone)[arguments]: Add phase 'install-man-pages. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Michael Rohleder2020-09-041-0/+8
* gnu: linux-libre: Use Python 3 in make-linux-libre-source.•••Successfully tested with all of the linux-libre versions we carry in Guix: 4.4.234, 4.9.234, 4.14.195, 4.19.142, 5.4.61 and 5.8.5. * gnu/packages/linux.scm (make-linux-libre-source): Replace python-2 by python-wrapper. Do not set the PYTHON environment variable, which is not required when using python-wrapper. Maxim Cournoyer2020-09-031-6/+1
* gnu: nix: Add the "--enable-gc" configure flag to fix build.•••Fixes <http://issues.guix.gnu.org/43181>. * gnu/packages/package-management.scm (nix)[configure-flags]: Add the "--enable-gc" option. Maxim Cournoyer2020-09-031-2/+1
* ci: In the 'core' subset, build GCC >= 7.•••Suggested by Jan Nieuwenhuizen <janneke@gnu.org>. * gnu/ci.scm (%core-packages): Keep only GCC >= 7. Ludovic Courtès2020-09-031-1/+1
* gnu: Add bitlbee-purple.•••* gnu/packages/messaging.scm (bitlbee-purple): New variable. Ludovic Courtès2020-09-031-0/+23
* doc: Add "Getting Started" section.•••* doc/guix.texi (Getting Started): New node. (Binary Installation): Refer to it and to "Application Setup". (After System Installation): Refer to "Getting Started". (Features): Add introductory sentence. Ludovic Courtès2020-09-031-1/+216
* gnu: linux-libre: Update to 5.8.6.•••* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.6. (linux-libre-5.8-pristine-source): Update hash. (deblob-scripts-5.8): Update to 5.8.6. Mark H Weaver2020-09-031-3/+3
* gnu: linux-libre@5.4: Update to 5.4.62.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.62. (linux-libre-5.4-pristine-source): Update hash. (deblob-scripts-5.4): Update to 5.4.62. Mark H Weaver2020-09-031-3/+3
* gnu: linux-libre@4.19: Update to 4.19.143.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.143. (linux-libre-4.19-pristine-source): Update hash. (deblob-scripts-4.19): Update to 4.19.143. Mark H Weaver2020-09-031-3/+3
* gnu: linux-libre@4.14: Update to 4.14.196.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.196. (linux-libre-4.14-pristine-source): Update hash. (deblob-scripts-4.14): Update to 4.14.196. Mark H Weaver2020-09-031-3/+3
* gnu: linux-libre@4.9: Update to 4.9.235.•••* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.235. (linux-libre-4.9-pristine-source): Update hash. (deblob-scripts-4.9): Update to 4.9.235. Mark H Weaver2020-09-031-3/+3
* gnu: linux-libre@4.4: Update to 4.4.235.•••* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.235. (linux-libre-4.4-pristine-source): Update hash. (deblob-scripts-4.4): Update to 4.4.235. Mark H Weaver2020-09-031-3/+3
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