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* shepherd: 'read-pid-file/container' terminates the whole process group.•••This mirrors a change made in the Shepherd 0.8.0. Previously, upon startup failure, we could have left processes behind. * gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead of PID. Ludovic Courtès2020-06-121-1/+2
* shepherd: Unblock signals in the child process.•••Fixes <https://bugs.gnu.org/41791>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. This change mirrors changes made in the Shepherd 0.8.1, where signals are blocked in the shepherd process in support of 'signalfd'. The regression was introduced with the switch to 0.8.1 in 3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not receive SIGTERM upon 'herd stop SERVICE'. * gnu/build/shepherd.scm <top level>: Autoload (shepherd system). (make-forkexec-constructor/container): Call call to 'sigaction' and 'unblock-signals'. Ludovic Courtès2020-06-121-2/+14
* gnu: Add exercism and dependencies.•••* gnu/packages/education.scm (exercism): New variable. * gnu/packages/patches/exercism-disable-self-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/golang.scm (go-github-com-spf13-afero) (go-github-com-spf13-cast) (go-github-com-spf13-cobra) (go-github-com-spf13-jwalterweatherman) (go-github-com-spf13-viper) (go-github-com-fsnotify-fsnotify) (go-github-com-magiconair-properties) (go-github-com-pelletier-go-toml) (go-github-com-subosito-gotenv) (go-gopkg-in-ini-v1) (go-github-com-mitchellh-mapstructure): New variables. Jakub Kądziołka2020-06-114-2/+398
* gnu: linux-libre: Update to 5.4.46.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@5.7: Update to 5.7.2.•••* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128. (linux-libre-5.7-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@5.6: Remove.•••Users of linux-libre-5.6 should migrate to version 5.7. * gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version) (linux-libre-5.6-pristine-source, linux-libre-5.6-source) (linux-libre-headers-5.6, linux-libre-arm-generic-5.6) (linux-libre-arm64-generic-5.6): Remove variables. Mark H Weaver2020-06-111-51/+0
* gnu: linux-libre@4.19: Update to 4.19.128.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.14: Update to 4.14.184.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.9: Update to 4.9.227.•••* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: linux-libre@4.4: Update to 4.4.227.•••* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver2020-06-111-2/+2
* gnu: adns: Update to 1.6.0.•••* gnu/packages/adns.scm (adns): Update to 1.6.0. [source]: Use https. [native-inputs]: Add m4. Efraim Flashner2020-06-111-5/+8
* gnu: subversion: Update to 1.14.0.•••* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI. Efraim Flashner2020-06-111-3/+3
* gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].•••* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field. Ludovic Courtès2020-06-111-0/+15
* packages: 'package-grafts' returns grafts for all the relevant outputs.•••Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test. Ludovic Courtès2020-06-112-43/+62
* gnu: r-with-tests, r-minimal: Update to 4.0.1.•••* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-brms: Update to 2.13.0.•••* gnu/packages/cran.scm (r-brms): Update to 2.13.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-crochet: Update to 2.3.0.•••* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-openmx: Update to 2.17.4.•••* gnu/packages/cran.scm (r-openmx): Update to 2.17.4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-stanheaders: Update to 2.21.0-5.•••* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel. Ricardo Wurmus2020-06-111-2/+5
* gnu: r-semtools: Update to 0.5-3.•••* gnu/packages/cran.scm (r-semtools): Update to 0.5-3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-sem: Update to 3.1-11.•••* gnu/packages/cran.scm (r-sem): Update to 3.1-11. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-emplik: Update to 1.1-1.•••* gnu/packages/cran.scm (r-emplik): Update to 1.1-1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rsvg: Update to 2.1.•••* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-3/+4
* gnu: r-actuar: Update to 3.0-0.•••* gnu/packages/cran.scm (r-actuar): Update to 3.0-0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-gdina: Update to 2.8.0.•••* gnu/packages/cran.scm (r-gdina): Update to 2.8.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-seewave: Update to 2.1.6.•••* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile. Ricardo Wurmus2020-06-111-2/+5
* gnu: r-elasticnet: Update to 1.3.•••* gnu/packages/cran.scm (r-elasticnet): Update to 1.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-showtext: Update to 0.8-1.•••* gnu/packages/cran.scm (r-showtext): Update to 0.8-1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-showtextdb: Update to 3.0.•••* gnu/packages/cran.scm (r-showtextdb): Update to 3.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-abcrlda: Update to 1.0.3.•••* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rgdal: Update to 1.5-10.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-3/+4
* gnu: r-parameters: Update to 0.8.0.•••* gnu/packages/cran.scm (r-parameters): Update to 0.8.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-systemfonts: Update to 0.2.3.•••* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rhpcblasctl: Update to 0.20-137.•••* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-ggraph: Update to 2.0.3.•••* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-europepmc: Update to 0.4.•••* gnu/packages/cran.scm (r-europepmc): Update to 0.4. [propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+7
* gnu: r-msigdbr: Update to 7.1.1.•••* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-bookdown: Update to 0.19.•••* gnu/packages/cran.scm (r-bookdown): Update to 0.19. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-rms: Update to 6.0-0.•••* gnu/packages/cran.scm (r-rms): Update to 6.0-0. [propagated-inputs]: Add r-cluster, r-digest, and r-mass. Ricardo Wurmus2020-06-111-3/+6
* gnu: r-polspline: Update to 1.1.19.•••* gnu/packages/cran.scm (r-polspline): Update to 1.1.19. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-lemon: Update to 0.4.5.•••* gnu/packages/cran.scm (r-lemon): Update to 0.4.5. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-picante: Update to 1.8.2.•••* gnu/packages/cran.scm (r-picante): Update to 1.8.2. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-lavaan: Update to 0.6-6.•••* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-cmprsk: Update to 2.2-10.•••* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-gmp: Update to 0.6-0.•••* gnu/packages/cran.scm (r-gmp): Update to 0.6-0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-bigrquery: Update to 1.3.1.•••* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-iso: Update to 0.0-18.1.•••* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-sjplot: Update to 2.8.4.•••* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-effectsize: Update to 0.3.1.•••* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-bayesplot: Update to 1.7.2.•••* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4