summaryrefslogtreecommitdiff
Commit message (Collapse)AuthorAgeFilesLines
* maint: Add gnupg to the manifest.Ludovic Courtès2024-01-311-1/+6
| | | | | | * manifest.scm: Add gnupg. Change-Id: Id5e90f87e5c3a07aa3e49afa97cc0b6d3ce71b41
* channels: ‘latest-channel-instances’ traverses user-provided channels first.Ludovic Courtès2024-01-312-64/+119
| | | | | | | | | | | | | | | | | | | | | | | Previously, ‘latest-channel-instances’ would perform a depth-first traversal of channels. Since dependencies specified in ‘.guix-channel’ are usually less specific that those provided by the user, this would lead to the use of instances corresponding to those less specific specs, which in turn might declare dependencies that do not exist for the more specific instances. This commit changes ‘latest-channel-instances’ to perform a breadth-first traversal, thereby giving user-supplied channels higher precedence over dependencies found via ‘.guix-channel’. Fixes <https://issues.guix.gnu.org/68822>. * guix/channels.scm (latest-channel-instances)[ignore?]: Remove. [instance-name, same-named?, more-specific?]: New procedures. Rewrite as a breadth-first traversal using a regular loop. * tests/channels.scm ("latest-channel-instances reads dependencies from most-specific instance"): New test. Change-Id: Iba518145cfd209f04293a56246dbfee3b714650b
* channels: Tweak test.Ludovic Courtès2024-01-311-3/+3
| | | | | | | * tests/channels.scm ("latest-channel-instances excludes duplicate channel dependencies"): Use ‘equal?’ rather than ‘string=?’ since we can get #f. Change-Id: I437b9d7e23200cf0c98b1593e68b1d355bc2de01
* gnu: torbrowser: Copy buildID from the official build.Clément Lassieur2024-01-311-2/+3
| | | | | | | * gnu/packages/tor.scm (%moz-build-date): Update to 20240115174022. Reported-by: André Batista <nandre@riseup.net> Change-Id: Ia057d6efe9db9e04ece03d994ee226ecdbc6cc04
* Revert "gnu: Add minify."Sharlatan Hellseher2024-01-301-20/+0
| | | | | | | | | This reverts commit f8c2d8141efef4565d12d8247bade069889b720e. Fixes: error: go-github-com-tdewolff-minify-v2: unbound variable <https://ci.guix.gnu.org/eval/1086875/log/raw> Change-Id: I26e02842980cf09e924ac1cae8f3a6421a005276
* teams: go: Add golang-xyz.scm to scope.Sharlatan Hellseher2024-01-301-0/+1
| | | | | | * etc/teams.scm (go): Add "gnu/packages/golang-xyz.scm". Change-Id: I580eadf52b631c6582e256a2900786b53483a466
* gnu: Add minify.Thomas Ieong2024-01-301-0/+20
| | | | | | | | | * gnu/packages/web.scm (minify): New variable. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Co-authored-by: Hilton Chain <hako@ultrarare.space> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I7289c77a17f63501b6c7771606d396241333ac3a
* gnu: Add go-github-com-matryer-try.Thomas Ieong2024-01-301-1/+36
| | | | | | | * gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
* gnu: Add go-github-com-djherbis-atime.Thomas Ieong2024-01-301-0/+23
| | | | | | | * gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
* gnu: Add (gnu packages golang-xyz) module.Sharlatan Hellseher2024-01-302-0/+40
| | | | | | | * gnu/packages/golang-xyz.scm: New file. * gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope. Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
* gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web).Sharlatan Hellseher2024-01-302-17/+29
| | | | | | | | | | | Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by the owner on Feb 27, 2023. * gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from here ... * gnu/packages/golang-web.scm: ... to here. Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
* gnu: axoloti-patcher: Add missing headers.Ricardo Wurmus2024-01-301-0/+2
| | | | | | | * gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic headers in search paths. Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
* gnu: axoloti-patcher: Use G-expression.Ricardo Wurmus2024-01-301-105/+101
| | | | | | | * gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression; delete 'make-git-checkout-writable phase. Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
* gnu: yggdrasil: Update to 0.5.5.Artyom V. Poptsov2024-01-301-2/+2
| | | | | | | * gnu/packages/networking.scm (yggdrasil): Update to 0.5.5. Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: guile-hoot: Update to 0.3.0.David Thompson2024-01-301-2/+2
| | | | | | * gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0. Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
* gnu: r-scran: Update to 1.30.2.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2. Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
* gnu: r-bioccheck: Update to 1.38.2.Ricardo Wurmus2024-01-301-3/+4
| | | | | | | * gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2. [propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest. Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
* gnu: r-flowcore: Update to 2.14.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1. Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
* gnu: r-rsubread: Update to 2.16.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1. Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
* gnu: r-edger: Update to 4.0.12.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12. Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
* gnu: r-biostrings: Update to 2.70.2.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2. Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
* gnu: r-biomart: Update to 2.58.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1. Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
* gnu: r-robustbase: Update to 0.99-2.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2. Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
* gnu: r-viridis: Update to 0.6.5.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/statistics.scm (r-viridis): Update to 0.6.5. Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
* gnu: r-commonmark: Update to 1.9.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1. Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
* gnu: r-data-table: Update to 1.15.0.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.15.0. Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
* gnu: r-tfruns: Update to 1.5.2.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-tfruns): Update to 1.5.2. Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
* gnu: r-spatstat-geom: Update to 3.2-8.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8. Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
* gnu: r-iheatmapr: Update to 0.7.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1. Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
* gnu: r-emoa: Update to 0.5-2.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-emoa): Update to 0.5-2. Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
* gnu: r-tidygraph: Update to 1.3.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1. Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
* gnu: r-xgboost: Update to 1.7.7.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1. Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
* gnu: r-yulab-utils: Update to 0.1.4.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4. Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
* gnu: r-bqtl: Update to 1.0-36.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-bqtl): Update to 1.0-36. Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
* gnu: r-listenv: Update to 0.9.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-listenv): Update to 0.9.1. Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
* gnu: r-phylobase: Update to 0.8.12.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-phylobase): Update to 0.8.12. Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
* gnu: r-densityclust: Update to 0.3.3.Ricardo Wurmus2024-01-301-4/+4
| | | | | | | * gnu/packages/cran.scm (r-densityclust): Update to 0.3.3. [propagated-inputs]: Remove r-rcpp; add r-cpp11. Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
* gnu: r-interp: Update to 1.1-6.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-interp): Update to 1.1-6. Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
* gnu: r-zip: Update to 2.3.1.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-zip): Update to 2.3.1. Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
* gnu: r-nestedcv: Update to 0.7.4.Ricardo Wurmus2024-01-301-2/+3
| | | | | | | * gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4. [propagated-inputs]: Add r-rhpcblasctl. Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
* gnu: r-laeken: Update to 0.5.3.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-laeken): Update to 0.5.3. Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
* gnu: r-sp: Update to 2.1-3.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-sp): Update to 2.1-3. Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
* gnu: r-powerlaw: Update to 0.80.0.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0. Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
* gnu: r-httpuv: Update to 1.6.14.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-httpuv): Update to 1.6.14. Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
* gnu: r-ga: Update to 3.2.4.Ricardo Wurmus2024-01-301-2/+2
| | | | | | * gnu/packages/cran.scm (r-ga): Update to 3.2.4. Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
* gnu: r-ggm: Update to 2.5.1.Ricardo Wurmus2024-01-301-3/+3
| | | | | | | * gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1. [propagated-inputs]: Add r-biocmanager. Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
* gnu: r-rjava: Update to 1.0-11.Ricardo Wurmus2024-01-301-32/+4
| | | | | | | | | * gnu/packages/cran.scm (r-rjava): Update to 1.0-11. [source]: Remove snippet. [arguments]: Remove 'replace-bundled-minified-JavaScript phase. [native-inputs]: Remove esbuild. Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
* gnu: r-catdata: Update to 1.2.4.Ricardo Wurmus2024-01-301-2/+3
| | | | | | | * gnu/packages/cran.scm (r-catdata): Update to 1.2.4. [native-inputs]: Add r-knitr. Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
* gnu: r-r-devices: Update to 2.17.2.Ricardo Wurmus2024-01-301-2/+11
| | | | | | | | * gnu/packages/cran.scm (r-r-devices): Update to 2.17.2. [arguments]: Add 'set-HOME phase. [native-inputs]: Add r-r-rsp. Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
* gnu: r-igraph: Update to 2.0.1.1.Ricardo Wurmus2024-01-301-3/+6
| | | | | | | | * gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1. [properties]: Tell updater to keep extra native input "which". [native-inputs]: Add pkg-config and which. Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
generated by cgit v1.2.3 (git 2.47.1) at 2025-01-31 12:19:47 +0000