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* build: Correctly determine the system type for GNU/Hurd systems.•••* m4/guix.m4 (GUIX_SYSTEM_TYPE): Add case for gnu. Manolis Ragkousis2016-08-101-0/+3
* gnu: wrap-python3: Create more symlinks.•••* gnu/pyckages/python.csm (wrap-python3): Create additional symlinks for pip and python-config. Signed-off-by: Andreas Enge <andreas@enge.fr> Hartmut Goebel2016-08-101-2/+2
* gnu: sqlite: Update to 3.13.0.•••* gnu/packages/databases.scm (sqlite): Update to 3.13.0. Ben Woodcroft2016-08-101-2/+2
* utils: Fix 'modify-phases' docstring.•••* guix/build/utils.scm (modify-phases): Fix the documentation string. Taylan Ulrich Bayırlı/Kammer2016-08-101-2/+2
* gnu: curl: Update to 7.50.1.•••* gnu/packages/curl.scm (curl)[replacement]: Remove field. [version, source]: Update to 7.50.1. [arguments]: Re-enable test. (curl-7.50.1): Remove variable. Leo Famulari2016-08-101-20/+2
* packages: Use '--no-backup-if-mismatch' for patching.•••Suggested-by: Ludovic Courtès <ludo@gnu.org> * guix/packages.scm (patch-and-repack)[build]: Use '--no-backup-if-mismatch' patch flag to avoid making *.orig files. Alex Kost2016-08-101-2/+5
* gnu: nautilus: Add gvfs support.•••* gnu/packages/gnome.scm (nautilus)[inputs]: Add gvfs. Ricardo Wurmus2016-08-101-2/+2
* gnu: font-xfree86-type1: Add missing input.•••* gnu/packages/xorg.scm (font-xfree86-type1)[inputs]: Add mkfontscale. Efraim Flashner2016-08-101-1/+2
* gnu: font-misc-ethiopic: Add missing input.•••* gnu/packages/xorg.scm (font-misc-ethiopic)[inputs]: Add mkfontscale. Efraim Flashner2016-08-101-1/+2
* gnu: qt: Don't build examples.•••* gnu/packages/qt.scm (qt)[arguments]: Add flag to not build the examples. Efraim Flashner2016-08-101-0/+4
* gnu: openbox: Update source location.•••* gnu/packages/openbox.scm (openbox)[source]: Download from openbox.org. Efraim Flashner2016-08-101-1/+1
* gnu: openbox: Fix autostart.•••* gnu/packages/openbox.scm (openbox)[inputs]: Add python2. [propagated-inputs]: Add python2-pyxdg. Efraim Flashner2016-08-101-1/+5
* gnu: ruby-arel: Update to 7.1.1.•••* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.1. Ben Woodcroft2016-08-101-2/+2
* gnu: ruby-simplecov: Update to 0.12.0.•••* gnu/packages/ruby.scm (ruby-simplecov): Update to 0.12.0. Ben Woodcroft2016-08-101-2/+2
* gnu: ruby-gherkin3: Rename to ruby-gherkin and update to 4.0.0.•••* gnu/packages/ruby.scm (ruby-gherkin3): Rename to ruby-gherkin and update to 4.0.0. (ruby-cucumber-core)[propagated-inputs]: Adjust accordingly. Ben Woodcroft2016-08-101-9/+9
* gnu: ruby-spring: Update to 1.7.2.•••* gnu/packages/rails.scm (ruby-spring): Update to 1.7.2. Ben Woodcroft2016-08-101-3/+5
* gnu: ruby-rspec: Update to 3.5.0.•••These packages should be updated together. * gnu/packages/ruby.scm (ruby-rspec): Update to 3.5.0. (ruby-rspec-core): Update to 3.5.0. (ruby-rspec-mocks): Update to 3.5.0. (ruby-rspec-expectation): Update to 3.5.1. (ruby-rspec-support): Update to 3.5.0. Ben Woodcroft2016-08-101-10/+10
* gnu: ruby-rack: Update to 2.0.1.•••* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.1. [source]: Use GitHub and patch. [native-inputs]: Add ruby-concurrent, ruby-minitest, ruby-minitest-sprint, which. Remove ruby-bacon. [propagated-inputs]: Add ruby-concurrent. * gnu/packages/patches/ruby-rack-ignore-failing-test.patch: New file. * gnu/local.mk: Add it. Ben Woodcroft2016-08-103-4/+31
* gnu: ruby-concurrent: Remove dependencies.•••ruby-timecop and ruby-yard will links in a circular dependency chain after ruby-rack is updated. * gnu/packages/ruby.scm (ruby-concurrent)[arguments]: Remove timecop-dependent tests. [native-inputs]: Remove ruby-timecop, ruby-yard. Ben Woodcroft2016-08-101-4/+9
* gnu: ruby-activesupport: Update to 5.0.0.•••* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.0.0. [arguments]: Include the library as a test. [propagated-inputs]: Add ruby-concurrent. Remove ruby-thread-safe, ruby-json. Ben Woodcroft2016-08-101-6/+10
* gnu: ruby-puma: Update to 3.6.0.•••* gnu/packages/ruby.scm (ruby-puma): Update to 3.6.0. [arguments]: Add 'delete-integration-tests' phase. (gnu/packages/patches/ruby-puma-ignore-broken-test.patch): Remove only one broken test. Ben Woodcroft2016-08-102-15/+23
* gnu: mpd: Update to 0.19.18.•••* gnu/packages/mpd.scm (mpd): Update to 0.19.18. Leo Famulari2016-08-091-2/+2
* grafts: Make grafting faster.•••* guix/build/graft.scm (replace-store-references): Reimplement for faster grafting. Use binary I/O instead of textual I/O. Replace 'mapping' argument (an alist) with 'replacement-table' (a vhash). (rewrite-directory): Adapt to mapping argument change in 'replace-store-references'. Remove 'with-fluids' that previously set '%default-port-encoding' to #f, since we now use binary I/O. (define-inline, hash-length): New macros. (nix-base32-char?): New variable. Mark H Weaver2016-08-091-52/+169
* gnu: bash-completion: Update to 2.3. Update the patch.•••* gnu/packages/bash.scm (bash-completion): Update to 2.3. * gnu/packages/patches/bash-completion-directories.patch: New version of the patch for the same purpose. Tomáš Čech2016-08-092-27/+21
* gnu: bash-completion: Modify to modify-phases.•••* gnu/packages/bash.scm (bash-completion): Use modify-phases instead of alist-cons-after. Tomáš Čech2016-08-091-23/+23
* gnu: Add perl-crypt-openssl-random.•••* gnu/packages/tls.scm (perl-crypt-openssl-random): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+25
* gnu: Add perl-io-socket-inet6.•••* gnu/packages/networking.scm (perl-io-socket-inet6): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+30
* gnu: Add perl-mail-spf.•••* gnu/package/mail.scm (perl-mail-spf): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-1/+44
* gnu: Add perl-crypt-openssl-bignum.•••* gnu/packages/tls.scm (perl-crypt-openssl-bignum, perl-crypt-arguments): New variables. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+36
* gnu: Add perl-crypt-openssl-rsa.•••* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+28
* gnu: Add perl-geo-ip.•••* gnu/packages/networking.scm (perl-geo-ip): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+24
* gnu: Add perl-net-cidr-lite.•••* gnu/packages/networking.scm (perl-net-cidr-lite): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+22
* gnu: Add perl-encode-detect.•••* gnu/packages/perl.scm (perl-encode-detect): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+24
* gnu: Add perl-test-trailingspace.•••* gnu/packages/perl.scm (perl-test-trailingspace): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+31
* gnu: Add perl-file-find-object-rule.•••* gnu/packages/perl.scm (perl-file-find-object-rule): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+30
* gnu: Add perl-file-find-object.•••* gnu/packages/perl.scm (perl-file-find-object): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Leo Famulari2016-08-081-0/+27
* gnu: Add perl-net-patricia.•••* gnu/packages/networking.scm (perl-net-patricia): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+28
* gnu: Add perl-netaddr-ip.•••* gnu/packages/networking.scm (perl-netaddr-ip): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+33
* gnu: Add perl-net-dns-resolver-programmable.•••* gnu/packages/networking.scm (perl-net-dns-resolver-programmable): New variable. * gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-083-0/+60
* gnu: Add perl-socket6.•••* gnu/packages/networking.scm (perl-socket6): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+33
* gnu: Add perl-net-dns.•••* gnu/packages/networking.scm (perl-net-dns): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-08-081-0/+24
* gnu: fontconfig: Fix CVE-2016-5384.•••* gnu/packages/fontutils.scm (fontconfig)[replacement]: New field. (fontconfig/fixed): New variable. * gnu/packages/patches/fontconfig-CVE-2016-5384.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Leo Famulari2016-08-083-0/+179
* gnu: recordmydesktop: Add ALSA support.•••* gnu/packages/video.scm (recordmydesktop)[inputs]: Add ALSA-LIB Signed-off-by: Leo Famulari <leo@famulari.name> 8p8c2016-08-081-0/+2
* gnu: Add tint2.•••* gnu/packages/xdisorg.scm (tint2): New variable. Mathieu Lirzin2016-08-081-2/+48
* gnu: Add mono.•••* gnu/packages/mono.scm: New file. * gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Jan Nieuwenhuizen2016-08-082-0/+110
* gnu: Add roary.•••* gnu/packages/bioinformatics.scm (roary): New variable. Ben Woodcroft2016-08-081-0/+116
* gnu: Add raxml.•••* gnu/packages/bioinformatics.scm (raxml): New variable. Ben Woodcroft2016-08-081-0/+40
* gnu: Add prank.•••* gnu/packages/bioinformatics.scm (prank): New variable. Ben Woodcroft2016-08-081-0/+52
* gnu: Add exonerate.•••* gnu/packages/bioinformatics.scm (exonerate): New variable. Ben Woodcroft2016-08-081-0/+31
* gnu: Add bppsuite.•••* gnu/packages/bioinformatics.scm (bppsuite): New variable. Ben Woodcroft2016-08-081-0/+42