| Commit message (Expand) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | system: Mark 'services' field as thunked.•••This allows us to make services dependent on (%current-system), for example. * gnu/system.scm (<operating-system>)[services]: Mark as thunked. | Ludovic Courtès | 2021-12-08 | 1 | -0/+1 |
| * | gnu: idutils: Fix build with glibc 2.33.•••* gnu/packages/idutils.scm (idutils)[source]: Remove reference to 'gets' from "lib/stdio.in.h". | Ludovic Courtès | 2021-12-08 | 1 | -1/+5 |
| * | gnu: libtorrent-rasterbar: Build with default cmake.•••* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Remove cmake flag. | Efraim Flashner | 2021-12-08 | 1 | -2/+1 |
| * | gnu: tadbit: Update to 1.0.1-1.5c4c1dd.•••* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-1.5c4c1dd. [arguments]: Remove trailing #T from build phases; pass -fcommon to test binaries; run tests conditionally. | Ricardo Wurmus | 2021-12-08 | 1 | -53/+59 |
| * | gnu: python2-sphinx: Remove websupport test.•••* gnu/packages/sphinx.scm (python2-sphinx)[arguments]: Remove websupport test file. | Ricardo Wurmus | 2021-12-08 | 1 | -0/+2 |
| * | gnu: python2-sphinxcontrib-websupport: Downgrade to 1.1.2.•••* gnu/packages/sphinx.scm (python2-sphinxcontrib-websupport): Downgrade to 1.1.2. [arguments]: Override; delete 'sanity-check phase. [propagated-inputs]: Override and add python2-six. (python-sphinxcontrib-websupport)[properties]: Record python2-variant. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+22 |
| * | gnu: python2-jinja2: Downgrade to 2.11.3•••* gnu/packages/python-xyz.scm (python2-jinja2): Downgrade to the last version supporting Python 2. (python-jinja2)[properties]: Record python2-variant. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+14 |
| * | gnu: python2-markupsafe: Downgrade to 1.1.1.•••* gnu/packages/python-xyz.scm (python2-markupsafe): Downgrade to 1.1.1, because that's the last version to support Python 2. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+14 |
| * | gnu: ocaml-mcl: Add -fcommon to compiler flags.•••* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+2 |
| * | gnu: paml: Pass -fcommon to compiler.•••* gnu/packages/bioinformatics.scm (paml)[arguments]: Set CFLAGS. | Ricardo Wurmus | 2021-12-08 | 1 | -1/+1 |
| * | gnu: paml: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (paml)[arguments]: Remove trailing #T from build phases. | Ricardo Wurmus | 2021-12-08 | 1 | -4/+2 |
| * | gnu: sambamba: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (sambamba)[arguments]: Remove trailing #T from build phases. | Ricardo Wurmus | 2021-12-08 | 1 | -6/+3 |
| * | gnu: discrover: Add texlive-fonts-ec to inputs.•••* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add texlive-fonts-ec. | Ricardo Wurmus | 2021-12-08 | 1 | -10/+10 |
| * | gnu: discrover: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (discrover)[arguments]: Remove trailing #T from build phases. | Ricardo Wurmus | 2021-12-08 | 1 | -4/+2 |
| * | gnu: tbsp: Update to 1.0.0-2.dc30c03.•••* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03. [arguments]: Relax requirement on matplot. This may turn out to be a mistake. [inputs]: Replace python-biopython with python-biopython-1.73. | Ricardo Wurmus | 2021-12-08 | 1 | -5/+12 |
| * | gnu: mantis: Update to 0.1-2.b6979a2.•••* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2. [arguments]: Disable the use of SSE4.2 instructions. [native-inputs]: Build with GCC 7. | Ricardo Wurmus | 2021-12-08 | 1 | -5/+10 |
| * | gnu: imp: Disable tests.•••* gnu/packages/bioinformatics.scm (imp)[arguments]: Disable unreliable test suite. | Ricardo Wurmus | 2021-12-08 | 1 | -1/+2 |
| * | gnu: snap-aligner: Update to 2.0.0.•••* gnu/packages/bioinformatics.scm (snap-aligner): Update to 2.0.0. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+2 |
| * | gnu: snap-aligner: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T from 'install phase. | Ricardo Wurmus | 2021-12-08 | 1 | -2/+1 |
| * | gnu: snap-aligner: Run tests conditionally.•••* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS? option. | Ricardo Wurmus | 2021-12-08 | 1 | -1/+3 |
| * | gnu: khmer: Cythonize source files.•••* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files. [arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp files from Cython sources; add 'build-extensions phase; replace 'check phase. | Ricardo Wurmus | 2021-12-08 | 1 | -8/+21 |
| * | gnu: cwltool: Update to 3.1.20211107152837.•••* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837. [arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T from build phases; fix /bin/sh invocations in test files. | Ricardo Wurmus | 2021-12-08 | 1 | -9/+16 |
| * | gnu: lollypop: Build with libsoup@2.•••* gnu/packages/gnome.scm (lollypop)[inputs]: Change from LIBSOUP to LIBSOUP-MINIMAL-2. | Marius Bakke | 2021-12-08 | 1 | -1/+1 |
| * | gnu: rhythmbox: Adjust inputs.•••* gnu/packages/gnome.scm (rhythmbox)[inputs]: Change from PYTHON2-PYGOBJECT to PYTHON-PYGOBJECT. Add LIBSOUP-MINIMAL-2. | Marius Bakke | 2021-12-08 | 1 | -1/+2 |
| * | gnu: labelme: Loosen Python requirements.•••* gnu/packages/image-processing.scm (labelme)[arguments]: Patch setup.py so it does not require a specific version of Matplotlib. | Marius Bakke | 2021-12-08 | 1 | -0/+6 |
| * | gnu: newick-utils: Pass -fcommon to compiler.•••* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Set CFLAGS. | Ricardo Wurmus | 2021-12-07 | 1 | -16/+18 |
| * | gnu: blasr: Update to 5.3.5.•••* gnu/packages/bioinformatics.scm (blasr): Update to 5.3.5. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+2 |
| * | gnu: blasr: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (blasr)[arguments]: Remove trailing #T from build phase. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+1 |
| * | gnu: blasr-libcpp: Update to 5.3.5.•••* gnu/packages/bioinformatics.scm (blasr-libcpp): Update to 5.3.5. [inputs]: Add htslib. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+3 |
| * | gnu: htseq: Update to 0.12.3.•••* gnu/packages/bioinformatics.scm (htseq): Update to 0.12.3. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+2 |
| * | gnu: clipper: Update to 2.0.1.•••* gnu/packages/bioinformatics.scm (clipper): Update to 2.0.1. [source]: Add snippet to remove pre-compiled files. [arguments]: Disable tests, delete 'sanity-check phase, and add 'use-python3-for-cython phase. | Ricardo Wurmus | 2021-12-07 | 1 | -7/+29 |
| * | gnu: pbbam: Update to 1.7.0.•••* gnu/packages/bioinformatics.scm (pbbam): Update to 1.7.0. [arguments]: Remove phase 'find-googletest; add phase 'patch-tests. [propagated-inputs]: Add pbcopper. | Ricardo Wurmus | 2021-12-07 | 1 | -19/+17 |
| * | gnu: bwa-pssm: Fix build.•••* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase 'patch-C-error. | Ricardo Wurmus | 2021-12-07 | 1 | -0/+8 |
| * | gnu: Add pbcopper.•••* gnu/packages/bioinformatics.scm (pbcopper): New variable. | Ricardo Wurmus | 2021-12-07 | 1 | -0/+36 |
| * | gnu: python-ndg-httpsclient: Add missing input.•••* gnu/packages/python-web.scm (python-ndg-httpsclient)[propagated-inputs]: Add python-pyasn1. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+2 |
| * | gnu: fsom: Build with GCC 6.•••* gnu/packages/bioinformatics.scm (fsom)[native-inputs]: Add gcc-6. [arguments]: Remove trailing #T. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+3 |
| * | gnu: python-velocyto: Remove generated C files.•••* gnu/packages/bioinformatics.scm (python-velocyto)[source]: Remove all generated .c files. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+5 |
| * | gnu: python-schema-salad: Update to 8.2.20211116214159.•••* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.2.20211116214159. [arguments]: Remove trailing #T. [propagated-inputs]: Replace python-cachecontrol-0.11 with python-cachecontrol. [native-inputs]: Add python-black. | Ricardo Wurmus | 2021-12-07 | 1 | -6/+6 |
| * | gnu: taxtastic: Update to 0.9.2.•••* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.9.2. [arguments]: Delete 'sanity-check and 'python37-compatibility phases; adjust 'prepare-directory phase. | Ricardo Wurmus | 2021-12-07 | 1 | -13/+7 |
| * | gnu: taxtastic: Run tests conditionally.•••* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Respect TESTS? option. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+3 |
| * | gnu: python-dendropy: Update to 4.5.1.•••* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.5.1. [arguments]: Skip failing tests. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+20 |
| * | gnu: python-cooler: Use python-cytoolz-for-cooler.•••* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace python-cytoolz with python-cytoolz-for-cooler. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+1 |
| * | gnu: Add python-cytoolz-for-cooler.•••* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): New variable. | Ricardo Wurmus | 2021-12-07 | 1 | -0/+16 |
| * | gnu: python-sparse: Update to 0.13.0.•••* gnu/packages/python-xyz.scm (python-sparse): Update to 0.13.0. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+2 |
| * | gnu: python-dask: Update to 2021.11.2.•••* gnu/packages/python-xyz.scm (python-dask): Update to 2021.11.2. [source]: Fetch from github. [arguments]: Remove phase 'disable-broken-tests. | Ricardo Wurmus | 2021-12-07 | 1 | -11/+7 |
| * | gnu: python-dask: Run tests conditionally.•••* gnu/packages/python-xyz.scm (python-dask)[arguments]: Respect TESTS? option. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+2 |
| * | gnu: python-dask: Add missing input for tests.•••* gnu/packages/python-xyz.scm (python-dask)[native-inputs]: Add python-pytest-rerunfailures. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+2 |
| * | gnu: phylip: Update to 3.697.•••* gnu/packages/bioinformatics.scm (phylip): Update to 3.697. | Ricardo Wurmus | 2021-12-07 | 1 | -2/+2 |
| * | gnu: phylip: Pass -fcommon to compiler.•••* gnu/packages/bioinformatics.scm (phylip)[arguments]: Set CFLAGS. | Ricardo Wurmus | 2021-12-07 | 1 | -1/+1 |
| * | gnu: phylip: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (phylip)[arguments]: Remove trailing #T from build phases. | Ricardo Wurmus | 2021-12-07 | 1 | -3/+2 |
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