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* gnu: r-broom-helpers: Update to 1.17.0.•••* gnu/packages/cran.scm (r-broom-helpers): Update to 1.17.0. [propagated-inputs]: Add r-cards. Change-Id: I11f08aa6500d9d88dc32ce49d72939078c4596cf Ricardo Wurmus2024-09-061-2/+3
* gnu: r-valr: Update to 0.8.2.•••* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.2. Change-Id: Ief21d6bdf38193d996df513e16ae74350e8ff92c Ricardo Wurmus2024-09-061-2/+2
* gnu: r-archivist: Update to 2.3.8.•••* gnu/packages/cran.scm (r-archivist): Update to 2.3.8. [native-inputs]: Remove r-knitr. Change-Id: I826db8b923c7954aafab2bb922ca814e6b718373 Ricardo Wurmus2024-09-061-4/+2
* gnu: r-geometry: Update to 0.5.0.•••* gnu/packages/cran.scm (r-geometry): Update to 0.5.0. Change-Id: I8097c44562c17e5892e55529894664ef9f1ea221 Ricardo Wurmus2024-09-061-3/+3
* gnu: Add r-cards.•••* gnu/packages/cran.scm (r-cards): New variable. Change-Id: I17c61d254407574610f78cb4afd21d8829632922 Ricardo Wurmus2024-09-061-0/+28
* gnu: lcsync: Update to 0.3.1.•••* gnu/packages/networking.scm (lcsync): Update to 0.3.1. Vagrant Cascadian2024-09-061-2/+2
* gnu: lcrq: Add compiler optimizations.•••* gnu/packages/networking.scm (lcrq)[arguments]: Pass compiler optimizations to configure. [phases]: Add 'speedtest phase. Vagrant Cascadian2024-09-061-0/+11
* gnu: lcrq: Update to 0.2.1.•••* gnu/packages/networking.scm (lcrq): Update to 0.2.1. Vagrant Cascadian2024-09-061-2/+2
* gnu: guile-hoot: Update to 0.5.0.•••* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.5.0. Change-Id: I6f205218eb9b2044378ebbda736407a3a85035b1 David Thompson2024-09-061-2/+2
* gnu: trealla: Update to 2.55.35.•••* gnu/packages/prolog.scm (trealla): Update to 2.55.35. Change-Id: Ibdc23c3f443d55a4e2f8c256531b64a97fc42c2f jgart2024-09-061-2/+2
* gnu: trealla: Update to 2.55.34.•••* gnu/packages/prolog.scm (trealla): Update to 2.55.34. Change-Id: Ida254b8f5877291cbcf8ac6ccb5e45a2f6d79a7f jgart2024-09-061-2/+2
* Add file to core-packages team.•••* etc/teams.scm (core-packages): Add multiprecision.scm, which contains inputs for gcc. Change-Id: I36bf34450942c55529a471838fcfca29ceb9ae45 Andreas Enge2024-09-061-0/+1
* Add myself to teams.•••* etc/teams.scm: Add teams to myself. Change-Id: I4d8c5bc5144cdd094063960c079527628ace4bbc Andreas Enge2024-09-061-1/+1
* gnu: kmime: Disable testFancyFormat test.•••Fixes <issues.guix.gnu.org/73067> * gnu/packages/kde-pim.scm (kmime)[arguments]: Disable testFancyFormat test. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba Zheng Junjie2024-09-071-0/+5
* gnu: qcoro-qt6: Adjust synopsis.•••* gnu/packages/qt.scm (qcoro-qt6)[synopsis]: Adjust it. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Zheng Junjie2024-09-061-0/+1
* gnu: qcoro-qt: Build with -fPIC•••* gnu/packages/qt.scm (qcoro-qt5, qcoro-qt6)[arguments]: Adjust configure-flags to add -fPIC to CMAKE_CXX_FLAGS. Change-Id: I5ed2ee18cec120b282863ce6a5f6b6b149059515 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Doğan Çeçen2024-09-061-1/+2
* gnu: kwin: Disable failing test on aarch64.•••* gnu/packages/kde-plasma.scm (kwin)[arguments]: Disable failing test on aarch64. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Roman Scherer2024-09-061-0/+6
* gnu: nano: Update to 8.2.•••* gnu/packages/text-editors.scm (nano): Update to 8.2. Change-Id: I72d3ead40cc5cabf52931567195d6bafd3e86d6e Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Andy Tai2024-09-061-2/+2
* gnu: flatpak: Update to 1.14.10 [security fixes].•••Fixes CVE-2024-42472. Fixes <https://issues.guix.gnu.org/73059>. * gnu/packages/package-management.scm (flatpak): Update to 1.14.10. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: Adjust it. Change-Id: Ia0bd866ee46e8b0cd24d37d14df61cdc22692d4e Zheng Junjie2024-09-062-7/+5
* gnu: bubblewrap: Update to 0.10.0.•••* gnu/packages/virtualization.scm (bubblewrap): Update to 0.10.0. [source]: Switch to git-fetch. [build-system]: Switch to meson-build-system. [native-inputs]: Add pkg-config. [arguments]: Use G-expressions, Remove trailing #t. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba Zheng Junjie2024-09-061-46/+45
* gnu: xournalpp: Show icons.•••Fixes: <https://issues.guix.gnu.org/51968> * gnu/packages/pdf.scm (xournalpp)[arguments]: Add phase to wrap GDK_PIXBUF_MODULE_FILE. [inputs]: Add ADWAITA-ICON-THEME. Change-Id: Ie0e20249462c66f974b2fe1e3156d5fc9cb01b62 Nicolas Goaziou2024-09-061-2/+9
* activation: Fix TOCTTOU in mkdir-p/perms.•••Fixes <https://issues.guix.gnu.org/47584>. I removed the 'Based upon mkdir-p from (guix build utils)' comment because it's quite a bit different now. * gnu/build/activation.scm (verify-not-symbolic): Delete. (mkdir-p/perms): Rewrite in terms of 'openat'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id2f5bcbb903283afd45f6109190210d02eb383c7 Maxime Devos2024-09-061-33/+57
* gnu: python-pytorch-lightning: Update to commit 2064887.•••* gnu/packages/machine-learning.scm (python-pytorch-lightning): Update to commit 2064887. [source]: Update URL. [arguments]<#:tests-flags>: Skip additional failing tests. <#:phases>: Adjust 'patch-version-detection' phase. David Elsing2024-09-061-119/+130
* gnu: python-torchmetrics: Update to 1.4.1.•••* gnu/packages/machine-learning.scm (python-torchmetrics): Update to 1.4.1. [source]: Switch to GitHub repository. [arguments]: New field. [propagated-inputs]: Add python-lightning-utilities. [home-page]: Update URL. David Elsing2024-09-061-6/+14
* gnu: python-lightning-utilities: Update to 0.11.6.•••* gnu/packages/machine-learning.scm (python-lightning-utilities): Update to 0.11.6. [source] Adjust URI. [build-system]: Move to pyproject-build-system. David Elsing2024-09-061-4/+4
* gnu: python-torchvision: Update to 0.19.0.•••* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.19.0. [arguments]: Add 'setenv' phase for finding libjpeg-turbo. [inputs]: Add ffmpeg. David Elsing2024-09-061-5/+16
* gnu: python-pytorch: Update to 2.4.0.•••This also updates the qnnpack-pytorch package. * gnu/packages/machine-learning.scm (%python-pytorch-version): Set to 2.4.0. (%python-pytorch-src): Adjust hash accordingly. [source]: Remove obsolete file deletions in snippet. (python-pytorch)[arguments]<#:phases>: Disable telemetry and set Python install directory. Remove obsolete USE_FFMPEG, USE_OPENCV and USE_PYTORCH_QNNPACK environment variables. [native-inputs]: Remove python-typing-extensions. [inputs]: Add brotli, cpp-httplib and zlib. Remove qnnpack. Use oneapi-dnnl, qnnpack-pytorch and xnnpack for all systems. [propagated-inputs]: Add onnx and python-typing-extensions. Use cpuinfo for all systems. [supported-systems]: New field. (python-pytorch-for-r-torch)[inputs]: Add qnnpack. * gnu/packages/patches/python-pytorch-fix-codegen.patch: Adjust patch. * gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch. * gnu/packages/patches/python-pytorch-without-kineto.patch: Adjust patch. David Elsing2024-09-065-134/+119
* gnu: cpp-httplib: Update to 0.16.0.•••* gnu/packages/cpp.scm (cpp-httplib): Update to 0.16.0. David Elsing2024-09-061-2/+2
* gnu: gloo: Update to commit 81925d1.•••* gnu/packages/machine-learning.scm (gloo): Update to commit 81925d1. [arguments]: Add -DCMAKE_CXX_STANDARD=17 to #:configure-flags. [supported-systems]: New field. David Elsing2024-09-061-3/+5
* gnu: onnx-optimizer: Update to 0.3.19.•••* gnu/packages/machine-learning.scm (onnx-optimizer): Update to 0.3.19. * gnu/packages/patches/onnx-optimizer-system-library.patch: Adjust patch. Co-authored-by: Andy Tai <atai@atai.org> David Elsing2024-09-062-41/+66
* gnu: onnx: Update to 1.16.2.•••* gnu/packages/machine-learning.scm (onnx): Update to 1.16.2. [source]: Remove patch. [build-system]: Move to pyproject-build-system. [arguments]<#:tests?>: Disable for systems where python-nbval is not supported. <#:phases>: Remove 'relax-requirements' phase. Pass "-DONNX_BUILD_TESTS" to CMake depending on tests?. [native-inputs]: Add python-fb-re2 and python-parameterized-next. Remove python-nbval on unsupported systems. * gnu/packages/patches/onnx-shared-libraries.patch: Adjust patch. * gnu/packages/patches/onnx-skip-model-downloads.patch: Adjust patch. * gnu/packages/patches/onnx-use-system-googletest.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Co-authored-by: Andy Tai <atai@atai.org> David Elsing2024-09-065-134/+97
* gnu: Remove onnx-for-torch2.•••* gnu/packages/machine-learning.scm (onnx-for-torch2): Delete variable. David Elsing2024-09-061-29/+0
* gnu: Remove onnx-optimizer-for-torch2.•••* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): Delete variable. David Elsing2024-09-061-8/+0
* gnu: Add python-parameterized-next.•••* gnu/packages/check.scm (python-parameterized-next): New variable. David Elsing2024-09-061-0/+22
* gnu: python-nbval: Update to 0.11.0.•••* gnu/packages/python-check.scm (python-nbval): Update to 0.11.0. [arguments]<#:phases>: Adjust 'check' phase. [native-inputs]: Remove python-pytest. [propagated-inputs]: Add python-coverage and python-pytest. Remove python-six. David Elsing2024-09-061-16/+11
* gnu: Add xnnpack-for-r-torch.•••* gnu/packages/machine-learning.scm (xnnpack-for-r-torch): New variable. (xnnpack)[inputs]: Use xnnpack-for-r-torch instead of xnnpack. David Elsing2024-09-061-1/+70
* gnu: xnnpack: Update to commit 08f1489.•••More tests fail when building the shared library, so they are disabled. The scripts to generate the autogenerated files run all commands at once, so they are converted to Makefiles first. * gnu/packages/machine-learning.scm (xnnpack): Update to commit 08f1489. [source]: Remove patch. Adjust snippet. [arguments]<#:configure-flags>: Add "-DXNNPACK_BUILD_TESTS=OFF". <#:tests?>: Disable tests. <#:phases>: Adjust 'fix-cmake' phase. Convert code generation scripts to Makefiles and run them. Run different missing scripts. * gnu/packages/patches/xnnpack-remove-broken-tests.patch: Remove file. * gnu/packages/patches/xnnpack-system-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove them. David Elsing2024-09-064-3036/+65
* gnu: fbgemm: Update to 0.7.0.•••* gnu/packages/machine-learning.scm (fbgemm): Update to 0.7.0. David Elsing2024-09-061-2/+2
* gnu: oneapi-dnnl: Update to 3.5.3.•••* gnu/packages/machine-learning.scm (oneapi-dnnl): Update to 3.5.3. David Elsing2024-09-061-2/+2
* gnu: nnpack: Depend on python-peachpy only for x86_64.•••* gnu/packages/machine-learning.scm (nnpack)[native-inputs]: Provide python-peachpy only when 'target-x86-64?'. David Elsing2024-09-061-1/+3
* gnu: cpuinfo: Update to commit 05332fd.•••Also disable tests on aarch64, because they fail in the build container. * gnu/packages/parallel.scm (cpuinfo): Update to commit 05332fd. [arguments]<#:tests?>: Disable on aarch64. [supported-systems]: Remove field. David Elsing2024-09-061-5/+5
* gnu: pthreadpool: Update to commit 560c60d.•••* gnu/packages/parallel.scm (pthreadpool): Update to commit 560c60d. David Elsing2024-09-061-3/+3
* gnu: flatbuffers-next: Update to 24.3.25.•••* gnu/packages/serialization.scm (flatbuffers-next): Update to 24.3.25. David Elsing2024-09-061-2/+2
* gnu: python-optree: Update to 0.11.0.•••* gnu/packages/python-xyz.scm (python-optree): Update to 0.11.0. [arguments]<#:test-flags>: Disable failing test. David Elsing2024-09-061-2/+7
* gnu: Remove python-typing-extensions-4.10.•••* gnu/packages/machine-learning.scm (python-typing-extensions-4.10): Delete variable. * gnu/packages/machine-learning.scm (python-pytorch)[native-inputs] Replace python-typing-extensions-4.10 with python-typing-extensions. David Elsing2024-09-062-13/+1
* gnu: asmjit: Update to commit 062e69c.•••* gnu/packages/cpp.scm (asmjit): Update to commit 062e69c. David Elsing2024-09-061-2/+2
* guix build: ‘--log-file’ honors the configured substitute URLs.•••* guix/scripts/build.scm (guix-build): When defining ‘urls’, add ‘substitute-urls’ call. * doc/guix.texi (Additional Build Options): Adjust ‘--log-file’ documentation. Change-Id: I40f0647efe64ba3a63a6379b8da80b0da8910f48 Ludovic Courtès2024-09-062-4/+6
* gnu: dezyne: Update to 2.18.3.•••* gnu/packages/dezyne.scm (dezyne): Update. [propagated]: Move into... [inputs]: ...this. Change-Id: I2da63e128e8f990a409b36ffaa38e56029740292 Janneke Nieuwenhuizen2024-09-061-6/+6
* Revert "gnu: gsl: Add debug output."•••This reverts commit 36e30a33e8c67d15ccfae6e4a4289c193f0759ad, which triggers too many rebuilds (‘gsl’ has 2.9K dependents). Change-Id: Ia0f0968b23dbf8234c69973eaf71d33a2e8c0690 Ludovic Courtès2024-09-061-1/+1
* gnu: gsl: Add debug output.•••* gnu/packages/maths.scm (gsl)[outputs]: Add "debug". Artyom Bologov2024-09-051-1/+1
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