diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a41c60738ad..58c0f07e879 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -752,6 +752,54 @@ directly access various slots (e.g. X, obs, var), or convert the data into @code{SingleCellExperiment} and Seurat objects.") (license license:expat)))) +(define-public r-anpan + (let ((commit "286b88dcf5e9e963a595482139aade154ee1dc86") + (revision "1")) + (package + (name "r-anpan") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biobakery/anpan") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10nw5v69gn4pxb4g5gd8nh9r1ywd6yczapl3dpdfms0434wcmkxm")))) + (properties `((upstream-name . "anpan"))) + (build-system r-build-system) + (propagated-inputs (list r-ape + r-cmdstanr + r-data-table + r-dplyr + r-fastglm + r-furrr + r-future + r-ggdendro + r-ggnewscale + r-ggplot2 + r-loo + r-mass + r-patchwork + r-phylogram + r-posterior + r-progressr + r-purrr + r-r-utils + r-stringr + r-tibble + r-tidyselect)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biobakery/anpan") + (synopsis "Quantifying microbial strain-host associations") + (description + "The goal of anpan is to consolidate statistical methods for strain +analysis. This includes automated filtering of metagenomic functional +profiles, testing genetic elements for association with outcomes, phylogenetic +association testing, and pathway-level random effects models.") + (license license:expat)))) + (define-public r-bedtorch (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") (revision "1")) |