diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 126 |
1 files changed, 67 insertions, 59 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 71ff921c629..314a11e429e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -184,7 +184,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.0.2") + (version "4.0.3") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -192,7 +192,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "0xdy3dy2bzdiba8z94hjykyra8si8a5q15s0bri7c26scjrymg6k")))) + "03cypg2qf7v9mq9mr9alz9w5y9m5kdgwbc97bp26pyymg253m609")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -269,6 +269,15 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ (substitute* "tools/help2man.pl" (("my \\$date = strftime \"%B %Y\", localtime" line) (string-append line " 1")))) + + ;; The "References" section of this file when converted to + ;; package.rds is sometimes stored with a newline, sometimes with + ;; a space. We avoid this problem by adding characters to break + ;; up the series of line break and spaces that is suspected to be + ;; the culprit. + (substitute* "src/library/methods/DESCRIPTION.in" + ((" ``Software") + " -- ``Software")) #t)) (add-before 'build 'set-locales (lambda _ @@ -533,14 +542,14 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-17") + (version "2.23-18") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "11g6b0q67vasxag6v9m4px33qqxpmnx47c73yv1dninv2pz76g9b")))) + "14640ddvxmczd5xjg1xsd51gll2glfg946vks8wmac6jb8680d43")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) (native-inputs @@ -599,13 +608,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-149") + (version "3.1-150") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "16n39v36hdp5vy3s3xqgs6ai0vgzx6j2py7ghpljdahndbqn6qn9")))) + (base32 "18qmbzrmrham8hbdlzsca7w46c5iqighx1ymzggll5s86c4s7kvr")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -815,13 +824,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.25") + (version "0.6.27") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "1r9dkq0kxkps54gkmgcdngsd068p054va2vhnqhs5jmwp2vsvk0m")))) + (base32 "0gr503pinailfglpfbzxprqw7w1jla8jr9nl856a4zch498zg1gl")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -863,13 +872,13 @@ non-estimable cases correctly.") (define-public r-labeling (package (name "r-labeling") - (version "0.3") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "labeling" version)) (sha256 - (base32 "13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d")))) + (base32 "0rfikd9gy70b8qz87q9axcwv8nmn9mbxfdwypxi0sghpfs9df8p0")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/labeling") (synopsis "Axis labeling algorithms") @@ -1600,13 +1609,13 @@ flexible and easy to set up.") (define-public r-r6 (package (name "r-r6") - (version "2.4.1") + (version "2.5.0") (source (origin (method url-fetch) (uri (cran-uri "R6" version)) (sha256 (base32 - "0gma5z41mx02ka9h96xdyf3p6i1rx0izczrzj26c4mbnh9jgvc16")))) + "00ifi2kwa7kn67xf0z1w6jfdicjczygbyi5mhfw2qlzc4sbazhdf")))) (build-system r-build-system) (home-page "https://github.com/wch/R6/") (synopsis "Classes with reference semantics in R") @@ -1622,13 +1631,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.7") + (version "0.4.8") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0f4rhnhyhgrv874l0yzm80ij6vcqdykfd7bzmnqs0wbgyhkxk8vq")))) + "0z8hnwbzpwal66svwp04csjm49vdb9rmwzvn8hyqn93qy6pd9015")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1640,14 +1649,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.0.3") + (version "3.0.4") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "0f4yi87w6509lnaz1lhk9s8nm3bzx21ij3273s0zx7vpbp0qlxxz")))) + "189yyl27mnswk1z51xw6gj3lyxgy6m332jq8xyvwskff57w2w692")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1765,14 +1774,14 @@ transformations.") (define-public r-formula (package (name "r-formula") - (version "1.2-3") + (version "1.2-4") (source (origin (method url-fetch) (uri (cran-uri "Formula" version)) (sha256 (base32 - "0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l")))) + "1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b")))) (properties `((upstream-name . "Formula"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Formula") @@ -1826,13 +1835,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.13.0") + (version "1.13.2") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "0wihpg1syjxzsij2fmhwh30vvf2cghw2b2qi79w36qwil2s8w2gn")))) + "011qsjfybvlpy2sjn9b6hfkcgwx2xrnpxlaqq3y3baps8n1lgnr7")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -1986,18 +1995,19 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-15") + (version "1.7-16") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "1xpxznlqm8wb4d5z2dcrl0wi3jjciq2hr5rcx2b5aaipiiyzm1ij")))) + "142m70im8yd4q01q7z02y3ia0f66yh4ikdznv0ps6c7yyigs5mwv")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) ("r-pixmap" ,r-pixmap) + ("r-progress" ,r-progress) ("r-sp" ,r-sp))) (home-page "http://pbil.univ-lyon1.fr/ADE-4") (synopsis "Multivariate data analysis and graphical display") @@ -2603,13 +2613,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.900.3.0") + (version "0.10.1.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0x8jm6cvfvp1kyckwwqxyy5hfkr8na28fih3k0lhi55wry3ml30q")))) + "0m0f4viw3r6zfk85b7v7h5dqydhdkjdacpl0bqxkmcndlzq8jnsb")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2695,13 +2705,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.4") + (version "2.5") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "1y2156w1abik8df8vl376ilv8s1jg8i0x2w4n4dwrnm3xxgp5kf0")))) + (base32 "0vmd1kykd4p1nwqbvra34sld5brac0wxb1zmav4wxj05shy67bd5")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2709,7 +2719,6 @@ certain criterion, e.g., it contains a certain regular file.") ("r-htmltools" ,r-htmltools) ("r-jsonlite" ,r-jsonlite) ("r-knitr" ,r-knitr) - ("r-mime" ,r-mime) ("r-stringr" ,r-stringr) ("r-tinytex" ,r-tinytex) ("r-xfun" ,r-xfun) @@ -3007,14 +3016,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.2-0") + (version "1.3-0") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "0r83p36l6m5sy4lxfjbfajn4gcqb0wv9zh7arny02s6c7fb4756y")))) + "1a9nnlf8j8j4ik34z19x187s8ki7pv1aayr344jrpn3h6m8fk3x5")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/segmented") (synopsis "Regression models with breakpoints estimation") @@ -3071,14 +3080,14 @@ standard R subsetting and Kronecker products.") (define-public r-iterators (package (name "r-iterators") - (version "1.0.12") + (version "1.0.13") (source (origin (method url-fetch) (uri (cran-uri "iterators" version)) (sha256 (base32 - "0jwzxaa3jm1xzgfv5pn0xqkk7rhm0xwvgn85w7xaw8xx1vb33gwn")))) + "190i1y2493v5c9z8978rb3idlwsjymy67k1assa9znljqbj313kp")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/iterators") (synopsis "Iterator construct for R") @@ -3091,14 +3100,14 @@ data.") (define-public r-foreach (package (name "r-foreach") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "foreach" version)) (sha256 (base32 - "0584nv49x8d8m1cak5drb54sxs3y594gd521kjsdwk4c849sgy8s")))) + "1qb83b1jvpmk8d6kfibkm5q2hiki0x5gipy758mwa62n56gdcnpv")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -3121,14 +3130,14 @@ parallel.") (define-public r-doparallel (package (name "r-doparallel") - (version "1.0.15") + (version "1.0.16") (source (origin (method url-fetch) (uri (cran-uri "doParallel" version)) (sha256 (base32 - "0vnqbha3gig3awbfvsfx3ni5jir398md1n7xmsb8jihnjsk7xbbi")))) + "1cjf0mxrxgls5pl7aj22fv9j488craib1wkc9np4f3gkckwjdfzi")))) (properties `((upstream-name . "doParallel"))) (build-system r-build-system) (propagated-inputs @@ -3144,14 +3153,14 @@ using the parallel package.") (define-public r-domc (package (name "r-domc") - (version "1.3.6") + (version "1.3.7") (source (origin (method url-fetch) (uri (cran-uri "doMC" version)) (sha256 (base32 - "1cn9gxavhvjswip8pwvkpi7q6wpzdllcsdjabga8akf55nggqxr9")))) + "0kdmfhp5m1wisjbfyl9d040jrmjmhcgjb0vdi536g2i9vixb5yny")))) (properties `((upstream-name . "doMC"))) (build-system r-build-system) (propagated-inputs @@ -3167,13 +3176,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "1wc2aiqkn01i571h29847yaq7vb624bkf44axp4ygpn0r85hdq7k")))) + "0in4d34nxb4pk2jygj0a21cqf0k0m4dhm4rjv68bnkp5kmmz6kbk")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3275,23 +3284,20 @@ path-wise fashion.") (define-public r-pkgmaker (package (name "r-pkgmaker") - (version "0.31.1") + (version "0.32.2") (source (origin (method url-fetch) (uri (cran-uri "pkgmaker" version)) (sha256 (base32 - "0r0ga20dy25v9y5gjbds4y6kaa5a7qknh503qdkzllcpzbibh0hp")))) + "14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) - ("r-bibtex" ,r-bibtex) ("r-codetools" ,r-codetools) ("r-digest" ,r-digest) - ("r-magrittr" ,r-magrittr) ("r-registry" ,r-registry) - ("r-stringi" ,r-stringi) ("r-stringr" ,r-stringr) ("r-withr" ,r-withr) ("r-xtable" ,r-xtable))) @@ -3373,14 +3379,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.7-3") + (version "1.7-4") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "0pf2pjb590z0jikgv1037xcp7dq06mg3dzmyffjw6gk7dd9blbdv")))) + "02935xcscjhb0jmnvh44hxlpjcgladrcr0gpz1jxq07m0qdqgaz6")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class))) @@ -4275,22 +4281,24 @@ mechanism.") (define-public r-ztable (package (name "r-ztable") - (version "0.2.0") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "ztable" version)) (sha256 (base32 - "0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy")))) + "0wxcdb7yp2r6w5iznz1k49npp5sn4jiybfcj30s3198hkcnv0r8y")))) (build-system r-build-system) (propagated-inputs `(("r-flextable" ,r-flextable) ("r-magrittr" ,r-magrittr) - ("r-moonbook" ,r-moonbook) ("r-officer" ,r-officer) ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rstudioapi" ,r-rstudioapi) ("r-scales" ,r-scales) ("r-stringr" ,r-stringr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/ztable") (synopsis "Zebra-striped tables in LaTeX and HTML formats for R") (description @@ -4411,13 +4419,13 @@ Wall Street Journal, among others. This package also provides (define-public r-statmod (package (name "r-statmod") - (version "1.4.34") + (version "1.4.35") (source (origin (method url-fetch) (uri (cran-uri "statmod" version)) (sha256 (base32 - "0yklg64aw5y8kfq5piafnrj1v3jv563iwzzl75g3kllrw23c508s")))) + "1zpqnfslq5gi6hvqjqnsn5kf2m986s1yb6kvyjd881n3h67l4pny")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/statmod") (native-inputs @@ -4666,14 +4674,14 @@ to change in the future.") (define-public r-flexmix (package (name "r-flexmix") - (version "2.3-15") + (version "2.3-17") (source (origin (method url-fetch) (uri (cran-uri "flexmix" version)) (sha256 (base32 - "0hrz2axp2c9548b1r0bmrl57219nn030qndb83a8garkzq5lqi5s")))) + "0jangf89174p0idh9afbicfiln2sz8jxc3bjc6n0j9036dw9n09n")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -4943,13 +4951,13 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-3") + (version "1.1-4") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "1hwlrdx3nhdp83pvy1h23i16vbbhi4kizdhr58c8nvg7kqdzb7qc")))) + (base32 "1iwrpyhz3khgw904zxz3pn7d61zvkd5m22gimzk57f8jjplxh1zm")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (native-inputs @@ -5080,13 +5088,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.73") + (version "5.75") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "0mjwwj3c7cfnprlh90ld0f1lll0mrqbx8mpnbfr7bvzg8h6072y4")))) + (base32 "05mb1qmwah5sdgg2z7m36lqkh479phvb1cx4sjnv1ykvmi9alxv5")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5136,14 +5144,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-23") + (version "1.1-25") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0qh29kqli0l3naylgb6jha6jllx4nwryr3hv9yk37blgyyql5mcr")))) + "0vvjac7hnn5lfbyl92zi8qxyc8kkjcwsg94z0p2s2q311in4gnp4")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) |