diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 636 |
1 files changed, 599 insertions, 37 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index bdd9810aa5..f41114207b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -31,7 +31,7 @@ ;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2016, 2017, 2018, 2021 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Julien Lepiller <julien@lepiller.eu> -;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016–2022 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au> ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> @@ -121,6 +121,8 @@ ;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io> ;;; Copyright © 2022 Wamm K. D. <jaft.r@outlook.com> ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com> +;;; Copyright © 2022 Artyom V. Poptsov <poptsov.artyom@gmail.com> +;;; Copyright © 2022 Paul A. Patience <paul@apatience.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -178,6 +180,7 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages inkscape) #:use-module (gnu packages image) + #:use-module (gnu packages image-processing) #:use-module (gnu packages imagemagick) #:use-module (gnu packages jupyter) #:use-module (gnu packages kerberos) @@ -3589,7 +3592,7 @@ files.") (define-public python-cli-helpers (package (name "python-cli-helpers") - (version "2.0.1") + (version "2.2.1") (source (origin ;; There's no source tarball on PyPI. @@ -3599,13 +3602,12 @@ files.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1bg2iw9l5dip0kbs00hajdk2v18wvhssbnq8hdf71278qf0wks5l")))) + (base32 "1hzavh9v9lkd1dn9f0nvg80f7v4banxvcrj10zy72przqz51k1sb")))) (build-system python-build-system) (native-inputs (list python-pytest)) (propagated-inputs - (list python-wcwidth python-configobj python-tabulate - python-terminaltables)) + (list python-wcwidth python-configobj python-tabulate)) (home-page "https://github.com/dbcli/cli_helpers") (synopsis "Helpers for building command-line apps") (description @@ -5641,13 +5643,13 @@ interested parties to subscribe to events, or \"signals\".") (define-public pelican (package (name "pelican") - (version "4.7.1") + (version "4.7.2") (source (origin (method url-fetch) (uri (pypi-uri "pelican" version)) (sha256 - (base32 "1sfckd3fhgnj305002fi3fdhkynric1ck7a5i8qany7k3vdsbasv")))) + (base32 "0m1kndc98hhnlq0yl05f4lzccw555pkxnrajj6lks18yh491kw8w")))) (build-system python-build-system) (inputs (list python-blinker @@ -7738,6 +7740,65 @@ write a wide range of image data, including animated images, video, volumetric data, and scientific formats.") (license license:bsd-2))) +(define-public python-pyvips + (package + (name "python-pyvips") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyvips" version)) + (sha256 + (base32 "0lq71iiic4pc8qhxr60gi141w25pjnn4vsh05d5l0fjkgjsv137b")))) + (build-system python-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + ;; Maybe switch to API mode (i.e., build the C extension)? + ;; It is advertised as faster to start up and run. + ;; However, even with ‘pkg-config’ and ‘python-pkgconfig’ in + ;; ‘native-inputs’, the API mode build fails with: + ;; + ;; Falling back to ABI mode. Details: unable to find pkg-config package "vips" + ;; + ;; The build doesn't actually fail without the below + ;; substitution, it's just slower because ‘setup.py’ tries + ;; (unsuccessfully) to download the Python ‘pkgconfig’ module. + (add-after 'unpack 'fix-build + (lambda _ + (substitute* "setup.py" + (("^( +setup_)API\\(\\)\n" _ prefix) + (string-append prefix "ABI()\n"))))) + (add-after 'unpack 'fix-paths + (lambda _ + (substitute* "pyvips/__init__.py" + (("^( +_vips_libname) = '(libvips.so.42)'" + _ var libname) + (format #f "~a = '~a/lib/~a'" + var #$(this-package-input "vips") libname)) + (("^( +_gobject_libname) = '(libgobject-2.0.so.0)'" + _ var libname) + (format #f "~a = '~a/lib/~a'" + var #$(this-package-input "glib") libname))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "setup.py" "test"))))))) + (native-inputs + (list python-pyperf + python-pytest + python-pytest-flake8 + python-pytest-runner)) + (inputs + (list glib vips)) + (propagated-inputs + (list python-cffi)) + (home-page "https://github.com/libvips/pyvips") + (synopsis "Python bindings for VIPS") + (description "The @code{pyvips} package provides Python bindings for VIPS, +a multithreaded image-processing system with low memory needs.") + (license license:expat))) + (define-public python-pycparser (package (name "python-pycparser") @@ -9284,10 +9345,8 @@ installing @code{kernelspec}s for use with Jupyter frontends.") "1ikqvv335qfrhmlji0iclci6pnm2c3fvnxf031jr1d68j79g6ypd")))) (build-system python-build-system) (arguments '(#:tests? #f)) ;no test suite - (propagated-inputs - (list python-ipykernel)) (inputs - (list pari-gp readline)) + (list pari-gp readline python-ipykernel)) (home-page "https://github.com/sagemath/pari-jupyter") (synopsis "Jupyter kernel for PARI/GP") (description "The package provides a PARI/GP kernel for Jupyter.") @@ -10071,6 +10130,25 @@ generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems.") (license license:expat))) +(define-public python-py-tes + (package + (name "python-py-tes") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "py-tes" version)) + (sha256 + (base32 "0b272y392v0mnq0f3sm5kgcx8fn4qwfbym89hhvqxz3xkganr4pn")))) + (build-system python-build-system) + (propagated-inputs + (list python-attrs python-dateutil python-future python-requests)) + (home-page "https://github.com/ohsu-comp-bio/py-tes") + (synopsis "Library for communicating with the GA4GH Task Execution API") + (description "This package provides a library for communicating with the +GA4GH Task Execution API.") + (license license:expat))) + (define-public python-toposort (package (name "python-toposort") @@ -10172,6 +10250,147 @@ providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.") (license license:expat))) +(define-public snakemake-6 + (package + (inherit snakemake) + (name "snakemake") + (version "6.15.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09yrpi9f86r9yvcm2dfjs5zy87c4j31bxama77kfd6y8yfrrjlai")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We + ;; fix this by calling the snakemake wrapper instead. + + ;; XXX: There is another instance of sys.executable on line 692, but + ;; it is not clear how to patch it. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "snakemake/executors/__init__.py" + (("\\{sys.executable\\} -m snakemake") + (string-append (assoc-ref outputs "out") + "/bin/snakemake"))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") + ;; This test attempts to change S3 buckets on AWS and fails + ;; because there are no AWS credentials. + (delete-file "tests/test_tibanna.py") + (invoke "pytest"))))))) + (inputs + (list python-appdirs + python-configargparse + python-connection-pool + python-datrie + python-docutils + python-filelock + python-gitpython + python-jinja2 + python-jsonschema + python-nbformat + python-networkx + python-psutil + python-pulp + python-pyyaml + python-py-tes + python-ratelimiter + python-requests + python-smart-open + python-stopit + python-tabulate + python-toposort + python-wrapt)) + (native-inputs + (list git-minimal + python-wrapper + python-pytest + python-pandas + python-requests-mock)))) + +(define-public snakemake-7 + (package + (inherit snakemake-6) + (name "snakemake") + (version "7.7.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/snakemake/snakemake") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We + ;; fix this by calling the snakemake wrapper instead. + + ;; XXX: There is another instance of sys.executable on line 692, but + ;; it is not clear how to patch it. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "snakemake/executors/__init__.py" + (("\\{sys.executable\\} -m snakemake") + (string-append (assoc-ref outputs "out") + "/bin/snakemake"))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") + ;; This test attempts to change S3 buckets on AWS and fails + ;; because there are no AWS credentials. + (delete-file "tests/test_tibanna.py") + ;; It's a similar story with this test, which requires access + ;; to the Google Storage service. + (delete-file "tests/test_google_lifesciences.py") + (invoke "pytest"))))))) + (inputs + (list python-appdirs + python-configargparse + python-connection-pool + python-datrie + python-docutils + python-filelock + python-gitpython + python-jinja2 + python-jsonschema + python-nbformat + python-networkx + python-psutil + python-pulp + python-pyyaml + python-py-tes + python-ratelimiter + python-requests + python-retry + python-smart-open + python-stopit + python-tabulate + python-toposort + python-wrapt + python-yte)) + (native-inputs + (list git-minimal + python-wrapper + python-pytest + python-pandas + python-requests-mock)))) + (define-public python-pyqrcode (package (name "python-pyqrcode") @@ -13510,6 +13729,34 @@ Debian-related files, such as: JSON Reference and JSON Pointer.") (license license:bsd-3))) +(define-public python-fastbencode + (package + (name "python-fastbencode") + (version "0.0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fastbencode" version)) + (sha256 + (base32 "1r66w3vpmvfmssshjpgqaj2m14c8p94nymr96mwn61idajz9mg5n")))) + (build-system python-build-system) + (home-page "https://github.com/breezy-team/fastbencode") + (synopsis "Python Bencode (de)serializer with optional fast C extensions") + (description + "The fastbencode Python package implements the bencode serialization +format for storing and transmitting loosely structured data, originally used +by BitTorrent. + +The format can encode four different types of values: byte strings, integers, +lists, and dictionaries (associative arrays). It's simple and unaffected by +endianness, + +This package includes both a pure-Python version and an optional C extension +based on Cython. Both provide the same functionality, but the C version has +significantly better performance.") + (license (list license:expat ; _bencode_py.py + license:gpl2+)))) ; __init__.py + (define-public python-fastjsonschema (package (name "python-fastjsonschema") @@ -14014,7 +14261,7 @@ in the data.") "1iqrxhd8hvlyf8cqbc731ssnwm61wrycnbiczy5wsfahd3hlh8i4")))) (build-system python-build-system) (propagated-inputs - (list python-ipykernel python-jupyter-client python-prompt-toolkit-2 + (list python-ipykernel python-jupyter-client python-prompt-toolkit python-pygments)) (native-inputs (list python-nose python-pytest)) @@ -14046,9 +14293,8 @@ Jupyter kernels such as IJulia and IRKernel.") (assoc-ref outputs "out") "/bin")))))))) ;; Remove the python-ipython propagated input, to avoid the cycle (propagated-inputs - (alist-delete - "python-ipython" - (package-propagated-inputs python-jupyter-console))))) + (modify-inputs (package-propagated-inputs python-jupyter-console) + (delete "python-ipython"))))) (define-public python-qtconsole (package @@ -14428,6 +14674,23 @@ be set via config files and/or environment variables.") (home-page "https://github.com/bw2/ConfigArgParse") (license license:expat))) +(define-public python-connection-pool + (package + (name "python-connection-pool") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "connection_pool" version)) + (sha256 + (base32 "1p6hfkcl4n3hhhcgjbaxn21i7b1yipag6j7dnilir4k5xxx9whmz")))) + (build-system python-build-system) + (home-page "https://github.com/zhouyl/ConnectionPool") + (synopsis "Thread-safe connection pool") + (description "This package provides a library implementing a thread-safe +connection pool.") + (license license:expat))) + (define-public python-argparse-manpage (package (name "python-argparse-manpage") @@ -16546,13 +16809,13 @@ is made as zipfile like as possible.") (define-public python-rich (package (name "python-rich") - (version "10.2.2") + (version "12.4.1") (source (origin (method url-fetch) (uri (pypi-uri "rich" version)) (sha256 (base32 - "1z5m5brcdf3vndpavcqj5nl35xby4x5rfj48klhwqycfqf3g9cqp")))) + "149vjb4cpf9mz14iig0b6d8065dm8aslp6pc45g9ipmp1wf00ffj")))) (build-system python-build-system) (arguments `(#:phases @@ -16581,7 +16844,7 @@ is made as zipfile like as possible.") (file-name (git-file-name name version)) (sha256 (base32 - "19f4svb363sn5708qkpa6lakmiwzyb25h8kmh7bqrsbbrvi9hr70")))))) + "17c3gljn8zv32xnpsgd3fqgqn4r7cdfqri41hridcpbhssdgkyp9")))))) (home-page "https://github.com/willmcgugan/rich") (synopsis "Render rich text and more to the terminal") (description @@ -18504,7 +18767,7 @@ for Kivy, the multitouch application platform.") (define-public python-kivy (package (name "python-kivy") - (version "1.10.1") + (version "2.1.0") (source (origin (method url-fetch) @@ -18512,7 +18775,7 @@ for Kivy, the multitouch application platform.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1zzxjdp78hfjjiklzr82l4zwibwcq4j6kgicspqs6iyyfn5yisbw")))) + "1cq4djfn7h8560mvz94dydsldg2jpp5w9rby7nafgmbh7fxg65is")))) (build-system python-build-system) (arguments `(#:tests? #f ; Tests require many optional packages @@ -18522,7 +18785,7 @@ for Kivy, the multitouch application platform.") (lambda* (#:key inputs #:allow-other-keys) (setenv "KIVY_SDL2_PATH" (search-input-directory inputs "/include/SDL2")))) - (add-before 'sanity-check 'set-home + (add-before 'build 'set-home (lambda _ ;; 'kivy/__init__.py' wants to create $HOME/.kivy. (setenv "HOME" (getcwd))))))) @@ -18542,6 +18805,35 @@ for Kivy, the multitouch application platform.") multitouch applications.") (license license:expat))) +(define-public python-kivymd + (package + (name "python-kivymd") + (version "0.104.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kivymd" version)) + (sha256 + (base32 "04lwy6j0agrdwa4a6dl6qs97nx9ysmscmm8psvdzjpyj8aa1zg4p")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;tests require network + #:phases + (modify-phases %standard-phases + (add-before 'sanity-check 'set-home + (lambda _ + ;; 'kivy/__init__.py' wants to create $HOME/.kivy. + (setenv "HOME" (getcwd))))))) + (native-inputs (list python-docutils)) + (propagated-inputs + (list python-kivy python-pillow python-pygments python-kivy-garden)) + (home-page "https://github.com/kivymd/KivyMD") + (synopsis "Material Design compliant widgets for use with Kivy") + (description + "This package provides Kivy widgets that approximate Google's Material +Design spec without sacrificing ease of use or application performance.") + (license license:expat))) + (define-public python2-kivy (package-with-python2 python-kivy)) @@ -23733,19 +24025,19 @@ identifying what the file is.") (define-public python-tldextract (package (name "python-tldextract") - (version "2.2.0") + (version "3.3.0") (source (origin (method url-fetch) (uri (pypi-uri "tldextract" version)) (sha256 (base32 - "1d5s8v6kpsgazyahflhji1cfdcf89rv7l7z55v774bhzvcjp2y99")))) + "1wac4yvcpgqjvls770mfx165amvy7gr00nnd2w24bqqwyamj9kdd")))) (build-system python-build-system) (native-inputs - (list python-pytest python-responses)) + (list python-pytest python-responses python-setuptools-scm)) (propagated-inputs - (list python-idna python-requests python-requests-file)) + (list python-filelock python-idna python-requests python-requests-file)) (home-page "https://github.com/john-kurkowski/tldextract") (synopsis @@ -23763,7 +24055,7 @@ Public Suffix List's private domains as well.") (define-public python-tldr (package (name "python-tldr") - (version "1.2.1") + (version "3.1.0") (source (origin ;; There's no test in PyPI. @@ -23773,20 +24065,23 @@ Public Suffix List's private domains as well.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0n9wqvjxspm18vlxf9j9slrcydshk4rkv5nwkrqhfq606n6zvks4")))) + (base32 "1hxmprqg8c4cvs19n7f80f3y7jj74i8sc2dmq2gdjmsdrb54bbzc")))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - ;; This test fails. It tries to open a network socket. - (invoke "pytest" "-vv" "-k" "not test_error_message"))))))) + (list #:phases + #~(modify-phases %standard-phases + (add-after 'build 'build-doc + (lambda _ + (invoke "make" "-C" "docs"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; This test fails. It tries to open a network socket. + (invoke "pytest" "-vv" "-k" "not test_error_message"))))))) (native-inputs - (list python-pytest python-pytest-runner)) + (list python-pytest python-pytest-runner python-sphinx-argparse)) (inputs - (list python-argcomplete python-colorama python-termcolor)) + (list python-argcomplete python-colorama python-termcolor python-shtab)) (home-page "https://github.com/tldr-pages/tldr-python-client") (synopsis "Python command-line client for tldr pages") (description "This package provides the @code{tldr} command allowing users @@ -26233,13 +26528,13 @@ scripts to load entry points more quickly.") (define-public python-funcparserlib (package (name "python-funcparserlib") - (version "1.0.0a0") ; last stable release was in 2013 + (version "1.0.0") (source (origin (method url-fetch) (uri (pypi-uri "funcparserlib" version)) (sha256 - (base32 "0ama5w5lswxlp3l4qfqq3zlg7i6qkw45jfl1f7p8w1vnj8m47yz6")))) + (base32 "0swbqf53x7lfnczvi566s1g3nkf5mfrxz7sbpyymricz57a3vlvx")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; no tests in PyPI and no setup.py in GitHub @@ -30986,6 +31281,53 @@ uses the parsed regular expression, so you get a much more accurate result than trying to just split strings.") (license license:asl2.0))) +(define-public python-pyperf + (package + (name "python-pyperf") + (version "2.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyperf" version)) + (sha256 + (base32 "189qf9wdbig0fk4n3bavx8acgdbay5lllfvw48jvbfaafb7y5hja")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + ;; Some of these tests fail with: + ;; + ;; ModuleNotFoundError: No module named 'pyperf' + ;; + ;; even when calling ‘add-installed-pythonpath’ in the ‘check’ + ;; phase. + (delete-file "pyperf/tests/test_examples.py"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; From tox.ini's ‘testenv.commands’. + (invoke "python" "-bb" "-Wd" + "-m" "unittest" "discover" + "-s" "pyperf/tests/" "-v"))))))) + (native-inputs + (list python-psutil)) + (home-page "https://github.com/psf/pyperf") + (synopsis "Toolkit for running Python benchmarks") + (description "The Python @code{pyperf} module is a toolkit for writing, +running and analyzing benchmarks. It features a simple API that can: + +@itemize +@item automatically calibrate a benchmark for a time budget; +@item spawn multiple worker processes; +@item compute the mean and standard deviation; +@item detect if a benchmark result seems unstable; +@item store benchmark results in JSON format; +@item support multiple units: seconds, bytes and integer. +@end itemize") + (license license:expat))) + (define-public python-pydispatcher (package (name "python-pydispatcher") @@ -31226,3 +31568,223 @@ object, which can be useful if you want to force your objects into a table.") "The @code{deep-merge} Python library provides a toolset to deeply merge nested data structures in Python like lists and dictionaries.") (license license:expat))) + +(define-public python-murmurhash3 + (package + (name "python-murmurhash3") + (version "2.3.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "murmurhash3" version)) + (sha256 + (base32 + "1gdzys1212dx70byz07ipknbw1awbqskh6aznlkm85js8b8qfczm")))) + (build-system python-build-system) + (native-inputs (list python-cython python-pytest)) + (inputs (list python)) + (arguments + (list #:modules + '((ice-9 ftw) (ice-9 match) + (guix build utils) + (guix build python-build-system)) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-source-file-times-to-1980 + (lambda _ + (let ((circa-1980 (* 10 366 24 60 60))) + (ftw "." + (lambda (file stat flag) + (utime file circa-1980 circa-1980) #t)))))))) + (home-page "https://github.com/veegee/mmh3") + (synopsis "Python wrapper for MurmurHash (MurmurHash3)") + (description + "@code{murmurhash3} is a Python library for MurmurHash (MurmurHash3), a set +of fast and robust hash functions. This library is a Python extension module +written in C.") + (license license:public-domain))) + +(define-public python-murmurhash + (package + (name "python-murmurhash") + (version "1.0.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "murmurhash" version)) + (sha256 + (base32 + "0vwkn98c703nvsigl2nz99rax2pafkx3djjfkgc49jiipmp3j2k3")))) + (build-system python-build-system) + (native-inputs (list python-cython python-pytest)) + (inputs (list python python-murmurhash3)) + (arguments + (list #:modules + '((ice-9 ftw) (ice-9 match) + (guix build utils) + (guix build python-build-system)) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-source-file-times-to-1980 + (lambda _ + (let ((circa-1980 (* 10 366 24 60 60))) + (ftw "." + (lambda (file stat flag) + (utime file circa-1980 circa-1980) #t)))))))) + (home-page "https://github.com/explosion/murmurhash") + (synopsis "Cython bindings for MurmurHash2") + (description "This package provides Cython bindings for MurmurHash2.") + (license license:expat))) + +;; Scooby requires for its test suite a ‘pyvips’ package that is missing its +;; VIPS dependency. +(define python-pyvips-for-python-scooby + (package + (inherit python-pyvips) + (name "python-pyvips-for-python-scooby") + (arguments + (substitute-keyword-arguments (package-arguments python-pyvips) + ((#:phases phases) + #~(modify-phases #$phases + (delete 'fix-paths) + ;; The checks won't succeed without VIPS. + (delete 'check) + (delete 'sanity-check))))) + (inputs + (modify-inputs (package-inputs python-pyvips) + (delete "vips"))) + (synopsis "pyvips for Scooby's test suite"))) + +(define-public python-scooby + (package + (name "python-scooby") + (version "0.5.12") + (source + ;; The PyPI tarball does not contain the tests. + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/banesullivan/scooby") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw")))) + (build-system python-build-system) + (native-inputs + (list python-beautifulsoup4 + python-numpy + python-pytest + python-pytest-cov + python-pyvips-for-python-scooby + python-scipy)) + (propagated-inputs + (list python-psutil)) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + (substitute* "tests/test_scooby.py" + ;; The test suite uses the no-version PyPI package + ;; (https://pypi.org/project/no-version/), + ;; but it doesn't seem worth packaging in Guix just for this. + (("scooby\\.report\\.VERSION_NOT_FOUND") + "scooby.report.MODULE_NOT_FOUND") + (("^ +import no_version # noqa.*") "")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (home-page "https://github.com/banesullivan/scooby") + (synopsis "Report hardware information and Python package versions") + (description + "The Scooby package reports the following information about the currently +running system: + +@itemize +@item operating system name; +@item hardware information including machine type (e.g., @samp{i386}, +@samp{x86_64}, etc.), CPU count and total RAM; +@item Python environment (e.g., Python, IPython, etc.); +@item file system name; +@item Python version; +@item versions of specified Python packages. +@end itemize + +It can generate reports as HTML tables or plain text lists. + +Scooby has no required dependencies, and only few optional dependencies.") + (license license:expat))) + +(define-public python-cymem + (package + (name "python-cymem") + (version "2.0.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "cymem" version)) + (sha256 + (base32 + "0pkyy60zk9654sj991w111p1l0m8wvz36nslw96x6nb9h6sjb5qn")))) + (build-system python-build-system) + (native-inputs + (list python-cython + python-pytest)) + (inputs + (list python)) + (arguments + (list + #:modules '((ice-9 ftw) + (ice-9 match) + (guix build utils) + (guix build python-build-system)) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-source-file-times-to-1980 + ;; XXX One of the tests uses a ZIP library to pack up some of the + ;; source tree, and fails with "ZIP does not support timestamps + ;; before 1980". Work around this by setting the file times in the + ;; source tree to sometime in early 1980. + (lambda _ + (let ((circa-1980 (* 10 366 24 60 60))) + (ftw "." (lambda (file stat flag) + (utime file circa-1980 circa-1980) + #t)))))))) + (home-page "https://github.com/explosion/cymem") + (synopsis "Cython memory pool for RAII-style memory management") + (description + "Cymem provides two small memory-management helpers for Cython. They make it +easy to tie memory to a Python object's life-cycle, so that the memory is freed +when the object is garbage collected.") + (license license:expat))) + +(define-public python-preshed + (package + (name "python-preshed") + (version "3.0.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "preshed" version)) + (sha256 + (base32 + "0akpydd23xqxx9d04drsnw9140rb3cv07r1zpzqz5wm0lf47afzv")))) + (build-system python-build-system) + (native-inputs (list python-cython python-cymem python-pytest)) + (inputs (list python python-cymem python-murmurhash)) + (arguments + (list #:modules + '((ice-9 ftw) (ice-9 match) + (guix build utils) + (guix build python-build-system)) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'set-source-file-times-to-1980 + (lambda _ + (let ((circa-1980 (* 10 366 24 60 60))) + (ftw "." + (lambda (file stat flag) + (utime file circa-1980 circa-1980) #t)))))))) + (home-page "https://github.com/explosion/preshed") + (synopsis "Cython hash tables that assume keys are pre-hashed") + (description + "Simple but high performance Cython hash table mapping pre-randomized keys +to void* values.") + (license license:expat))) |