diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 198 |
1 files changed, 169 insertions, 29 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b7fdb00266a..47f4ce1e9cd 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -145,7 +145,7 @@ ;;; Copyright © c4droid <c4droid@foxmail.com> ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2023 Attila Lendvai <attila@lendvai.name> -;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com> +;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2253,25 +2253,21 @@ library.") (version "3.8.0") (source (origin - (method url-fetch) - (uri (pypi-uri "h5py" version)) - (sha256 - (base32 - "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) + (method url-fetch) + (uri (pypi-uri "h5py" version)) + (sha256 + (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) (build-system python-build-system) (arguments - `(#:tests? #f ; no test target - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-hdf5-paths - (lambda* (#:key inputs #:allow-other-keys) - (setenv "HDF5_DIR" (assoc-ref inputs "hdf5"))))))) - (propagated-inputs - (list python-six python-numpy)) - (inputs - (list hdf5-1.10)) - (native-inputs - (list python-cython python-pkgconfig pkg-config)) + '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-hdf5-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "HDF5_DIR" + (assoc-ref inputs "hdf5"))))))) + (propagated-inputs (list python-six python-numpy)) + (inputs (list hdf5-1.10)) + (native-inputs (list pkg-config python-cython python-ipython + python-pkgconfig python-pytest)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description @@ -2282,6 +2278,30 @@ access to HDF5 files, datasets and groups using established Python and NumPy concepts.") (license license:bsd-3))) +(define-public python-hdf5storage + (package + (name "python-hdf5storage") + (version "0.1.19") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hdf5storage" version)) + (sha256 + (base32 "11pgxsqap9l7jsf52649q9mpj8a0w6p9im929lpr9s26ynnnn6ks")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-h5py python-numpy)) + (native-inputs (list python-nose)) + (home-page "https://github.com/frejanordsiek/hdf5storage") + (synopsis "Read and write Python data types from and to HDF5 files") + (description + "This Python package provides high-level utilities to read and write a +variety of Python types from and to @acronym{HDF5, Hierarchical Data Format} +formatted files. This package also provides support for MATLAB MAT v7.3 +formatted files, which are HDF5 files with a different extension and some +extra metadata. Because HDF5 and MAT files might need to be read from +untrusted sources, pickling is avoided in this package.") + (license license:bsd-2))) + (define-public python-hjson ;; Using commit from master branch as the PyPI version does not contain ;; the hjson/tests/ directory. @@ -2577,18 +2597,18 @@ conventions and aliases in the same expression.") (uri (pypi-uri "Wand" version)) (sha256 (base32 "1jpwm956vm35hmgjndr2jwrcql0bwvpsl88q5nr0x8ppxa2380gm")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'find-magickwand - (lambda* (#:key inputs #:allow-other-keys) - (setenv "MAGICK_HOME" (assoc-ref inputs "imagemagick")) - (setenv "WAND_MAGICK_LIBRARY_SUFFIX" ".Q16"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv"))))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'hardcode-lib-path + (lambda _ + (substitute* "wand/api.py" + (("os\\.environ\\.get\\('MAGICK_HOME'\\)") + (string-append "\"" #$(this-package-input "imagemagick") "\"")) + (("os\\.environ\\.get\\('WAND_MAGICK_LIBRARY_SUFFIX'\\)") + "\".Q16\""))))))) (native-inputs (list python-pytest)) (inputs @@ -10377,6 +10397,67 @@ finding unresolved symbols in Python code and their corresponding imports.") class constructs.") (license license:expat))) +(define-public python-jaraco-collections + (package + (name "python-jaraco-collections") + (version "5.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jaraco.collections" version)) + (sha256 + (base32 "0s7y3jr7c173k38pck1b17kxnvx2fl0qh9m9gdf64pr9kz8fi00n")))) + (build-system pyproject-build-system) + ;; Do not test pyproject.toml with python-pytest-checkdocs as it tries to + ;; download dependencies. + (arguments + '(#:test-flags '("-k" "not project"))) + (propagated-inputs (list python-jaraco-text)) + ;; TODO: Add python-pytest-ruff to native-inputs once it has been + ;; packaged. + (native-inputs (list python-pytest + python-pytest-black + python-pytest-checkdocs + python-pytest-cov + python-pytest-enabler + python-pytest-mypy)) + (home-page "https://github.com/jaraco/jaraco.collections") + (synopsis "Provides various collection objects") + (description + "This package provides models and classes to supplement the +standard library @code{collections} module. Examples include +@itemize +@item +RangeMap: A mapping that accepts a range of values for keys. +@item +Projection: A subset over an existing mapping. +@item +KeyTransformingDict: Generalized mapping with keys transformed by a function. +@item +FoldedCaseKeyedDict: A dict whose string keys are case-insensitive. +@item +BijectiveMap: A map where keys map to values and values back to their keys. +@item +ItemsAsAttributes: A mapping mix-in exposing items as attributes. +@item +IdentityOverrideMap: A map whose keys map by default to themselves unless overridden. +@item +FrozenDict: A hashable, immutable map. +@item +Enumeration: An object whose keys are enumerated. +@item +Everything: A container that contains all things. +@item +Least, Greatest: Objects that are always less than or greater than any other. +@item +pop_all: Return all items from the mutable sequence and remove them from that sequence. +@item +DictStack: A stack of dicts, great for sharing scopes. +@item +WeightedLookup: A specialized RangeMap for selecting an item by weights. +@end itemize") + (license license:expat))) + ;;; Variant used to break a cycle with python-pytest-enabler. (define-public python-jaraco-context-bootstrap (hidden-package @@ -10541,6 +10622,41 @@ releases.") (description "This package provides testing support by jaraco.") (license license:expat))) +(define-public python-jaraco-text + (package + (name "python-jaraco-text") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jaraco.text" version)) + (sha256 + (base32 "0b2rmx0sa61f75lkkr4nfaj3mkgmn3x9c1akpwarfbmksk42b7iq")))) + (build-system pyproject-build-system) + ;; Do not test pyproject.toml with python-pytest-checkdocs as it tries to + ;; download dependencies. + (arguments + '(#:test-flags '("-k" "not project"))) + (propagated-inputs (list python-autocommand python-inflect + python-jaraco-context python-jaraco-functools + python-more-itertools)) + ;; TODO: Add python-pytest-ruff to native-inputs once it has been + ;; packaged. + (native-inputs (list python-pytest + python-pytest-black + python-pytest-checkdocs + python-pytest-cov + python-pytest-enabler + python-pytest-mypy)) + (home-page "https://github.com/jaraco/jaraco.text") + (synopsis "Provides various routines for text manipulation") + (description + "This package provides handy routines for dealing with text, +such as wrapping, substitution, trimming, stripping, prefix and suffix +removal, line continuation, indentation, comment processing, identifier +processing, values parsing, case insensitive comparison, and more.") + (license license:expat))) + (define-public python-simplegeneric (package (name "python-simplegeneric") @@ -31695,6 +31811,30 @@ graph can be output for rendering by GraphViz or yEd.") function implementations based on the types of the arguments.") (license license:bsd-3))) +(define-public python-multimethod + (package + (name "python-multimethod") + (version "1.10") + (source + (origin + ;; No tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/coady/multimethod") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07xv92q7f4bkp6dzkqvcv0zxr11729qdak4s3ldmbhdwgsf44g5h")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest)) + (home-page "https://github.com/coady/multimethod") + (synopsis "Python support for multiple argument dispatching") + (description + "This package provides a decorator for adding multiple argument +dispatching to functions. The decorator creates a multimethod object as +needed and registers the function with its annotations.") + (license license:asl2.0))) + (define-public python-logical-unification (package (name "python-logical-unification") |