diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 47 |
1 files changed, 45 insertions, 2 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 57c9325f49..95f60aae7b 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -544,6 +544,49 @@ region of practical equivalence (rope), or that the second classifier has higher scores.") (license license:expat))) +(define-public python-fbpca + (package + (name "python-fbpca") + (version "1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "fbpca" version)) + (sha256 + (base32 + "1lbjqhqsdmqk86lb86q3ywf7561zmdny1dfvgwqkyrkr4ij7f1hm")))) + (build-system python-build-system) + (propagated-inputs + (list python-numpy python-scipy)) + (home-page "https://fbpca.readthedocs.io/") + (synopsis "Functions for principal component analysis and accuracy checks") + (description + "This package provides fast computations for @dfn{principal component +analysis} (PCA), SVD, and eigendecompositions via randomized methods") + (license license:bsd-3))) + +(define-public python-geosketch + (package + (name "python-geosketch") + (version "1.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "geosketch" version)) + (sha256 + (base32 + "0knch5h0p8xpm8bi3b5mxyaf1ywwimrsdmbnc1xr5icidcv9gzmv")))) + (build-system python-build-system) + (arguments '(#:tests? #false)) ;there are none + (propagated-inputs (list python-fbpca python-numpy python-scikit-learn)) + (home-page "https://github.com/brianhie/geosketch") + (synopsis "Geometry-preserving random sampling") + (description "geosketch is a Python package that implements the geometric +sketching algorithm described by Brian Hie, Hyunghoon Cho, Benjamin DeMeo, +Bryan Bryson, and Bonnie Berger in \"Geometric sketching compactly summarizes +the single-cell transcriptomic landscape\", Cell Systems (2019). This package +provides an example implementation of the algorithm as well as scripts +necessary for reproducing the experiments in the paper.") + (license license:expat))) + (define-public python-xarray (package (name "python-xarray") @@ -1183,7 +1226,7 @@ aggregated sum and more.") (define-public python-pyvista (package (name "python-pyvista") - (version "0.35.1") + (version "0.35.2") (source ;; The PyPI tarball does not contain the tests. ;; (However, we don't yet actually run the tests.) @@ -1194,7 +1237,7 @@ aggregated sum and more.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1rwwn8a4j3i22il6dxr2qzrnnz3n1gjbpa2p8gfzrjmzp5lzzk81")))) + (base32 "1qmxrhqm3ag736yb761jy1himwlr3p676xyqbry61h97dj11n6sq")))) (build-system python-build-system) (propagated-inputs (list python-appdirs |