diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 144 |
1 files changed, 107 insertions, 37 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 688621343e9..53c49e3ac7e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1927,13 +1927,13 @@ Prism-look is achieved with @code{theme_prism()} and (define-public r-ggrastr (package (name "r-ggrastr") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "ggrastr" version)) (sha256 (base32 - "07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2")))) + "1l90mlb6bqq98ifmlbs5481vch9inmzdnvnz192adklrr9nl09yb")))) (properties `((upstream-name . "ggrastr"))) (build-system r-build-system) (propagated-inputs (list r-cairo r-ggbeeswarm r-ggplot2 r-png r-ragg)) @@ -6203,13 +6203,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.6-0") + (version "1.6-1") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "1npwz49qmlqz46jrwlmv4929hb3wv3whxzj1bplyipp7h2z7z5zm")))) + (base32 "09d3jhk7iwjfhzyq0cwws1p5gspj9nxww5x7xvngh8hr9gan5wkn")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -7784,14 +7784,14 @@ or between integer vectors representing generic sequences.") (define-public r-ucminf (package (name "r-ucminf") - (version "1.1-4.3") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "ucminf" version)) (sha256 (base32 - "1vjrbavj909wlsyb82dq3rybk0nqay6vl81f2qiqrm12ks9pw3js")))) + "1x3d3l500kyqamzfjpz4qc38d6d3sha9av3rpxz0m4dhms28zpas")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/ucminf/") @@ -10804,15 +10804,17 @@ methods.") (define-public r-catdap (package (name "r-catdap") - (version "1.3.5") + (version "1.3.7") (source (origin (method url-fetch) (uri (cran-uri "catdap" version)) (sha256 (base32 - "0fyhl69z2lznymvpzxra9qvcg85ggzkfjy68c6mzdmf1ja44d2k5")))) + "0z84bx808hy70bkzdda9l42ljh9i9pz07isxq756axi7nr0ky6p9")))) (build-system r-build-system) + (propagated-inputs + (list r-rcolorbrewer)) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/catdap/") @@ -11023,14 +11025,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "1.1-6") + (version "1.1-7") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "024kyq81gwpl7shil63nng1z6pgqcwy6j6wj44gj7ch3vd9dz9fn")))) + "0m576fzaaqbz1pqjv585841k93xnmx844kpsjzivmpfyvhbmw81v")))) (build-system r-build-system) (propagated-inputs (list r-foreign r-lattice r-sp)) @@ -12769,14 +12771,14 @@ contains or can be specified by the user.") (define-public r-biasedurn (package (name "r-biasedurn") - (version "2.0.9") + (version "2.0.10") (source (origin (method url-fetch) (uri (cran-uri "BiasedUrn" version)) (sha256 (base32 - "02bb81x1hfvhm6qlcvp88bdpm1fhqak9cjbqz1r7fhg2qfxjpims")))) + "0jv0zvz1zs34h12zdgn3lqmn7hfkk2z6fkwbd9mlyddf34rkvfqv")))) (properties `((upstream-name . "BiasedUrn"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/BiasedUrn/") @@ -15318,14 +15320,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.10.3") + (version "0.10.4") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q")))) + "0ddwfkrzwbj1bykvifzrb11hs5kh2a6ykr3ac1hi7cqpqikymfna")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) @@ -18188,14 +18190,14 @@ library.") (define-public r-ontologyindex (package (name "r-ontologyindex") - (version "2.10") + (version "2.11") (source (origin (method url-fetch) (uri (cran-uri "ontologyIndex" version)) (sha256 (base32 - "0hisb9scxyyqkxhxhvgsgwix54pkq0zma3xq3ywczyazvzcxd5f9")))) + "17ndvqvb74b980gpb3hpg9bd68bb5f52k9s1i2kd1f9cdrdjvw97")))) (properties `((upstream-name . "ontologyIndex"))) (build-system r-build-system) (native-inputs @@ -18576,14 +18578,14 @@ packages.") (define-public r-assertive-code (package (name "r-assertive-code") - (version "0.0-3") + (version "0.0-4") (source (origin (method url-fetch) (uri (cran-uri "assertive.code" version)) (sha256 (base32 - "1qhbp668zfvhqs8avkhg9amp4zyazz6dsy4fc6kpdmw3sv8yi07g")))) + "11qkhbjyxw0njzhcszyc2452518yrn3jr5l4n9jnzq10xms090ig")))) (properties `((upstream-name . "assertive.code"))) (build-system r-build-system) @@ -25192,14 +25194,18 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.6-6") + (version "1.6-7") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "16irhw858771bc8ikshxk3ddpd7ymwgqmhnac4g7f160vymdfhnp")))) - (properties `((upstream-name . "rgdal"))) + (base32 "0cxfmm7niixw3dnbqm7a00603dyqjrphajqx0q5vjpdhmpyysp2m")))) + (properties + `((upstream-name . "rgdal") + (updater-extra-inputs . ("gdal" "proj")) + ;; These are only needed for Windows + (updater-ignored-inputs . ("curl" "openssl" "openssh" "pcre2")))) (build-system r-build-system) (inputs (list gdal proj zlib)) @@ -27915,21 +27921,58 @@ it may be seen by an animal with less acute vision.") classification and regression models.") (license license:gpl2+))) +(define-public r-caretensemble + (package + (name "r-caretensemble") + (version "2.0.2") + (source (origin + (method url-fetch) + (uri (cran-uri "caretEnsemble" version)) + (sha256 + (base32 + "0kagw1ilfz1yy1q0ysmkp3f13k08hiq84xk7d0xp5p7d5dsg7z6q")))) + (properties `((upstream-name . "caretEnsemble"))) + (build-system r-build-system) + (propagated-inputs (list r-caret + r-data-table + r-digest + r-ggplot2 + r-gridextra + r-lattice + r-pbapply + r-plyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/zachmayer/caretEnsemble") + (synopsis "Ensembles of caret models") + (description + "This is a framework for fitting multiple caret models. It uses the same +re-sampling strategy as well as creating ensembles of such models. Use +@code{caretList} to fit multiple models and then use @code{caretEnsemble} to +combine them greedily or @code{caretStack} to combine them using a caret +model.") + (license license:expat))) + (define-public r-adabag (package (name "r-adabag") - (version "4.3") + (version "5.0") (source (origin (method url-fetch) (uri (cran-uri "adabag" version)) (sha256 (base32 - "1v4cl50wbv834cpbwkkhaq5wf8s746fp8xkjrwvyw912x6b2zmik")))) + "03nnqgia61pavic9l6av0hh81wilxlkrx3g244ypar1fv9ppan7c")))) (properties `((upstream-name . "adabag"))) (build-system r-build-system) (propagated-inputs - (list r-caret r-doparallel r-foreach r-rpart)) + (list r-caret + r-consrank + r-doparallel + r-dplyr + r-foreach + r-rpart + r-tidyr)) (home-page "https://cran.r-project.org/web/packages/adabag/") (synopsis "Multiclass AdaBoost.M1, SAMME and Bagging") (description @@ -29527,14 +29570,14 @@ least squares.") (define-public r-regsem (package (name "r-regsem") - (version "1.9.3") + (version "1.9.5") (source (origin (method url-fetch) (uri (cran-uri "regsem" version)) (sha256 (base32 - "0vpizmdml55naxmhy9nfcm9ylhy15p9na7l0c6z3rvk29ck3g3sw")))) + "0lvsy7byrhiizyhwnwr22v8g36735nb0liyzl1nzk0py9rjbv4kk")))) (properties `((upstream-name . "regsem"))) (build-system r-build-system) (propagated-inputs @@ -29554,14 +29597,14 @@ perform @dfn{exploratory mediation} (XMed).") (define-public r-stanheaders (package (name "r-stanheaders") - (version "2.26.25") + (version "2.26.26") (source (origin (method url-fetch) (uri (cran-uri "StanHeaders" version)) (sha256 (base32 - "1xds719xga7144mxirjnqxmcv1ncj5fb5z247blm4dkbn9q2vg4k")))) + "1jr5sflqhg70jkgz3x0q9nrk2xjzm1l4zmyc7j89m755b209sq4k")))) (properties `((upstream-name . "StanHeaders"))) (build-system r-build-system) (inputs (list pandoc)) @@ -31265,14 +31308,14 @@ here.") (define-public r-projpred (package (name "r-projpred") - (version "2.5.0") + (version "2.6.0") (source (origin (method url-fetch) (uri (cran-uri "projpred" version)) (sha256 (base32 - "0faf0hq5kvibqyzgqqz2sdqms8g3vvxy6calpm6d2wzmbczi5v5n")))) + "1nkil537n43sz0ajkcyr0i38hb852qgcdxlgnirqkl0w98ax2hac")))) (properties `((upstream-name . "projpred"))) (build-system r-build-system) (propagated-inputs @@ -31290,7 +31333,7 @@ here.") r-rcpp r-rcpparmadillo r-rstantools - r-ucminf)) + r-scales)) (native-inputs (list r-knitr r-rmarkdown)) (home-page "https://mc-stan.org/projpred/") (synopsis "Projection predictive feature selection") @@ -31702,14 +31745,14 @@ designed to be distributed and efficient with the following goals: (define-public r-shapforxgboost (package (name "r-shapforxgboost") - (version "0.1.1") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "SHAPforxgboost" version)) (sha256 (base32 - "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5")))) + "0b3h6py80a0dmb8f8j4h7a7d0k6ld8l0qr24r8pxxy7dbqbyxh5x")))) (properties `((upstream-name . "SHAPforxgboost"))) (build-system r-build-system) @@ -31900,6 +31943,33 @@ a Huber regression warm start. Confidence intervals for regression coefficients are constructed using multiplier bootstrap.") (license license:gpl3))) +(define-public r-consrank + (package + (name "r-consrank") + (version "2.1.3") + (source (origin + (method url-fetch) + (uri (cran-uri "ConsRank" version)) + (sha256 + (base32 + "0v1dr7zj2fpgncymakv5qszdrlqzvc5zxfyc3yrsj09gbm0gvyby")))) + (properties `((upstream-name . "ConsRank"))) + (build-system r-build-system) + (propagated-inputs (list r-gtools r-proxy r-rgl r-rlist r-tidyr)) + (home-page "https://www.r-project.org/") + (synopsis + "Compute median rankings according to Kemeny's axiomatic approach") + (description + "This package lets you compute the median ranking according to Kemeny's +axiomatic approach. Rankings can or cannot contain ties, rankings can be both +complete or incomplete. The package contains both branch-and-bound algorithms +and heuristic solutions recently proposed. The searching space of the +solution can either be restricted to the universe of the permutations or +unrestricted to all possible ties. The package also provides some useful +utilities for deal with preference rankings, including both element-weight +Kemeny distance and correlation coefficient.") + (license license:gpl3))) + (define-public r-fastshap (package (name "r-fastshap") @@ -33395,13 +33465,13 @@ observations.") (define-public r-scico (package (name "r-scico") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "scico" version)) (sha256 - (base32 "1f2czfhzdpi5dqjbxvbrrcnxjpylc5zzghj70ihlh2agq3n9hw5g")))) + (base32 "1zcsqmsr9vjs4krz8vmq4z59wh6x25g9ca6yxb0wlq58nmws77k6")))) (properties `((upstream-name . "scico"))) (build-system r-build-system) (propagated-inputs (list r-scales)) @@ -36953,14 +37023,14 @@ the @code{raster} package that is suitable for extracting raster values using (define-public r-stringfish (package (name "r-stringfish") - (version "0.15.7") + (version "0.15.8") (source (origin (method url-fetch) (uri (cran-uri "stringfish" version)) (sha256 (base32 - "0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l")))) + "16w3i3d7jw2s1hzxr3mngrh7yjxvhswqdlpjw5g4z25i84lixcnz")))) (properties `((upstream-name . "stringfish"))) (build-system r-build-system) (propagated-inputs |