diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 17 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 821be215c8..b22d2ffb57 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -682,6 +682,7 @@ memory usage.") (list python-numpy python-pysam)) (inputs (list r-minimal)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://wlcb.oit.uci.edu/cpat/") (synopsis "Alignment-free distinction between coding and noncoding RNA") (description @@ -2084,7 +2085,7 @@ Format (GFF) with Biopython integration.") python-scikit-learn python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/simonvh/fluff/") (synopsis "Analysis and visualization of high-throughput sequencing data") (description @@ -2894,6 +2895,7 @@ cells).") (("'argparse',") ""))))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-pysam)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/cancerit/parabam") (synopsis "Parallel BAM File Analysis") (description "Parabam is a tool for processing sequencing files in @@ -2962,6 +2964,7 @@ encountered in PDB files prior to simulation tasks.") python-tqdm python-typing-extensions python-zipp)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/haessar/peaks2utr") (synopsis "Python CLI for annotating three prime UTR") (description @@ -3325,7 +3328,8 @@ features: python-pandas python-pysam python-tqdm)) - (native-inputs (list python-cython python-pytest)) + (native-inputs (list python-cython python-pytest python-setuptools + python-wheel)) (home-page "https://github.com/KindLab/scDamAndTools") (synopsis "Functions for processing raw scDam&T-seq data") (description @@ -3358,6 +3362,7 @@ counts.") python-numpy python-pybedtools python-pysam)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/r3fang/SnapTools") (synopsis "Tools for processing snap files" ) (description @@ -3387,6 +3392,7 @@ operations: (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-click python-numpy python-pandas python-parabam python-pysam)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/cancerit/telomerecat") (synopsis "Telomere computational analysis tool") (description "Telomerecat is a tool for estimating the average telomere @@ -5630,7 +5636,9 @@ annotations of the genome.") python-pytest python-pytest-mock python-pytest-timeout - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (home-page "https://cutadapt.readthedocs.io/en/stable/") (synopsis "Remove adapter sequences from nucleotide sequencing reads") (description @@ -5925,7 +5933,7 @@ accessing bigWig files.") (("tests/data/" m) (string-append (getcwd) "/" m)))))))) (propagated-inputs (list python-numpy)) - (native-inputs (list python-nose)) + (native-inputs (list python-nose python-setuptools python-wheel)) (home-page "https://github.com/brentp/pyfasta/") (synopsis "Pythonic access to fasta sequence files") (description @@ -9189,7 +9197,7 @@ experiments.") (propagated-inputs (list python-cython python-numpy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/macs3-project/MACS") (synopsis "Model based analysis for ChIP-Seq data") (description @@ -16378,6 +16386,7 @@ mapped paired-end sequencing reads.") python-cython python-msgpack python-pysam)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://pypi.org/project/genomic-regions/") (synopsis "Consistently handle genomic regions") (description "This package aims to simplify working with genomic region / @@ -20999,7 +21008,9 @@ updated much more frequently.") python-tqdm)) (native-inputs (list python-pytest - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (home-page "https://github.com/aertslab/ctxcore") (synopsis "Core functions for pycisTarget and the SCENIC tool suite") (description |