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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 437901b3a8..3ef79b4c26 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15542,6 +15542,42 @@ browser.") "http://genome.ucsc.edu/license/" "The contents of this package are free for all uses.")))) +(define-public skewer + (let ((commit "978e8e46cba44595ece623e5387749284a86b74b") + (revision "1")) + (package + (name "skewer") + (version (git-version "0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/relipmoc/skewer") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69")))) + (build-system gnu-build-system) + (arguments + (list + #:tests? #f + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda _ + (install-file "skewer" (string-append #$output "/bin"))))))) + ;; XXX Fails to build with GCC 11. + (native-inputs (list gcc-10)) + (home-page "https://github.com/relipmoc/skewer") + (synopsis "Bit-masked k-difference matching") + (description "Skewer implements the bit-masked k-difference matching +algorithm dedicated to the task of adapter trimming and it is specially +designed for processing next-generation sequencing (NGS) paired-end +sequences.") + (license license:expat)))) + (define-public f-seq (let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b") (revision "1")) |