diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 69 |
1 files changed, 29 insertions, 40 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d0fef2802c..57283ee9b9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21747,70 +21747,59 @@ patterns.") (license license:gpl3)))) (define-public r-voltron - (let ((commit "5057b703479239a9aaba761f07e65d849f6111f8") + (let ((commit "9f9415c72e9347f578a166981842d33e43b0466d") (revision "1")) (package (name "r-voltron") - (version (git-version "1.0.0" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/BIMSBbioinfo/VoltRon") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1nximl4708a7fdwn8ysxpni3mp6dx33cphavlay7hh1pa55pnzgn")) - (modules '((guix build utils))) - ;; The tripack package is not available under a free license, - ;; but interp provides free implementations of "tri.mesh" and - ;; "neighbours". - (snippet - '(substitute* '("DESCRIPTION" "NAMESPACE" "R/spatial.R") - (("tripack") "interp"))))) + (version (git-version "0.2.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/VoltRon") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bvvpj96ix2ij6034dfrh7za1lvf73qxqsdvbs2wrpc931s18q32")))) (properties `((upstream-name . "VoltRon"))) (build-system r-build-system) - (inputs (list opencv tbb zlib)) - (propagated-inputs (list r-anndata + (inputs (list opencv zlib)) + (propagated-inputs (list r-basilisk r-data-table r-dplyr r-ebimage - r-fastdummies - r-fnn - r-ggforce r-ggplot2 r-ggpubr r-ggrepel - r-hdf5r - r-htmltools + r-ids r-igraph - r-interp r-irlba r-magick r-matrix - r-morpho - r-raster + r-rann + r-rcdt r-rcpp + r-rcppannoy + r-rcpparmadillo r-reshape2 + r-reticulate r-rjson r-rlang - r-s4vectors - r-scales + r-s4arrays r-shiny r-shinyjs + r-sp r-stringr - r-terra - r-umap - r-xml)) - (native-inputs (list pkg-config)) + r-uwot)) + (native-inputs (list pkg-config r-testthat)) (home-page "https://github.com/BIMSBbioinfo/VoltRon") - (synopsis "VoltRon for Spatial Data Integration and Analysis") + (synopsis "VoltRon for spatial data integration and analysis") (description - "@code{VoltRon} is a toolbox for spatial data analysis, multi-omics -integration using spatial image registration. @code{VoltRon} is capable of -analyzing multiple types and modalities of spatially-aware datasets. -@code{VoltRon} visualizes and analyzes regions of interests (ROIs), spots, -cells and even molecules.") + "@code{VoltRon} is a novel spatial omic analysis toolbox for +multi-omics integration using spatial image registration. @code{VoltRon} is +capable of analyzing multiple types and modalities of spatially-aware +datasets. @code{VoltRon} visualizes and analyzes regions of interests (ROIs), +spots, cells and even molecules.") (license license:expat)))) (define-public methyldackel |