diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 50 |
1 files changed, 22 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 53c7d048c9..c2fa26cb59 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> @@ -4997,13 +4997,13 @@ only one command.") (define-public r-biocparallel (package (name "r-biocparallel") - (version "1.32.4") + (version "1.32.5") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocParallel" version)) (sha256 (base32 - "1m4i27zx3ajwygwp38lrxf36rs575dkaxxc6jawpj1kzn7whi5ym")))) + "1yd6ln9cl3dcvfziar52fkvqi2lzm31l7j21r1rwl1mpkz0xapir")))) (properties `((upstream-name . "BiocParallel"))) (build-system r-build-system) @@ -5118,13 +5118,13 @@ effort and encourages consistency.") (define-public r-bsgenome (package (name "r-bsgenome") - (version "1.66.1") + (version "1.66.2") (source (origin (method url-fetch) (uri (bioconductor-uri "BSgenome" version)) (sha256 (base32 - "1gzpvajw5n3qmym3312qaks450sq3w456kj4gqwaabgpjxbq7frm")))) + "0p75c52sw464bdqz7dyda9h8k2wsxdpdxxhya5awh977xaly90pf")))) (properties `((upstream-name . "BSgenome"))) (build-system r-build-system) @@ -5811,13 +5811,13 @@ genomic intervals. In addition, it can use BAM or BigWig files as input.") (define-public r-genomeinfodb (package (name "r-genomeinfodb") - (version "1.34.4") + (version "1.34.6") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomeInfoDb" version)) (sha256 (base32 - "1nskqmlar85zg96c1fbacl7dqg6r0gl814rc7yh482y4wgmwyg0r")))) + "123kp69fmy5pbqh0j6qxdkvkm4g9pdwzms01i8qnix3m1b9j597w")))) (properties `((upstream-name . "GenomeInfoDb"))) (build-system r-build-system) @@ -6483,14 +6483,14 @@ in SNV base substitution data.") (define-public r-msnbase (package (name "r-msnbase") - (version "2.24.0") + (version "2.24.2") (source (origin (method url-fetch) (uri (bioconductor-uri "MSnbase" version)) (sha256 (base32 - "16apm4qn7sbv06pk2i8k5z7qgkv0yq0h8ri32vikdplqxxh7h0cz")))) + "0jdq41rhn9qyhxfihvrgim76fzdrycc02wjsjdrff42gmray49w7")))) (properties `((upstream-name . "MSnbase"))) (build-system r-build-system) (propagated-inputs @@ -9916,14 +9916,14 @@ multiplication and calculation of row/column sums or means.") (define-public r-batchelor (package (name "r-batchelor") - (version "1.14.0") + (version "1.14.1") (source (origin (method url-fetch) (uri (bioconductor-uri "batchelor" version)) (sha256 (base32 - "1cdpq8zfn718qmsqjp79siddh3kzag4a90p276v261xbjvrxavjv")))) + "1yj84ba6px14hbqg8526527vfcxmzvmly34f7hba4vybdm1jscfm")))) (properties `((upstream-name . "batchelor"))) (build-system r-build-system) (propagated-inputs @@ -13629,38 +13629,31 @@ for other R packages to compile and link against.") (define-public r-flowworkspace (package (name "r-flowworkspace") - (version "4.10.0") + (version "4.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "flowWorkspace" version)) (sha256 (base32 - "07w2pnnzmivfc621c8pvndqrn1k245cwjrb0nnk2i85i3si4j9c3")))) + "0jmbfclkfm0n2mshk94906kivii7awlskf7l7ydn8ki8wrpzxqg4")))) (properties `((upstream-name . "flowWorkspace"))) (build-system r-build-system) (propagated-inputs - (list r-aws-s3 - r-aws-signature - r-bh + (list r-bh r-biobase r-biocgenerics + r-cpp11 r-cytolib r-data-table r-delayedarray - r-digest r-dplyr r-flowcore r-ggplot2 r-graph - r-lattice - r-latticeextra r-matrixstats r-ncdfflow r-rbgl - r-rcpp - r-rcpparmadillo - r-rcppparallel r-rgraphviz r-rhdf5lib r-rprotobuflib @@ -14646,14 +14639,14 @@ arrays based on fast wavelet-based functional models.") (define-public r-variancepartition (package (name "r-variancepartition") - (version "1.28.0") + (version "1.28.1") (source (origin (method url-fetch) (uri (bioconductor-uri "variancePartition" version)) (sha256 (base32 - "1mn91r0yrhz08m3vs2h3i35rcbxyc7sdfknmk6vcw1z75znjsnpl")))) + "0ypw3ckaf4qll83rl2bjzfc7g2m4v0n2mq645ppyfga8wv8kwssy")))) (properties `((upstream-name . "variancePartition"))) (build-system r-build-system) @@ -14674,6 +14667,7 @@ arrays based on fast wavelet-based functional models.") r-pbkrtest r-progress r-rdpack + r-remacor r-reshape2 r-rhpcblasctl r-rlang @@ -15614,13 +15608,13 @@ functionality.") (define-public r-biocviews (package (name "r-biocviews") - (version "1.66.1") + (version "1.66.2") (source (origin (method url-fetch) (uri (bioconductor-uri "biocViews" version)) (sha256 (base32 - "1xplkzm29v6aysfhb6kf2nnmvc37jmcvv6vsgbx8z8qccn96jk02")))) + "0fdxlixwf4d3p1prq37cgfvaiym44h2yd4bym6wp4dl8h648v99y")))) (properties `((upstream-name . "biocViews"))) (build-system r-build-system) @@ -15860,14 +15854,14 @@ analytics on packages.") (define-public r-biocset (package (name "r-biocset") - (version "1.12.0") + (version "1.12.1") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocSet" version)) (sha256 (base32 - "197cy5gdlvac7jqwb4dm4dbqfms2nvc3paqs75nsg9mpp1h5z8l8")))) + "1cqp5m6yic5vsp8k05r50sx2cmi9cwzxfmlswcjw28nascq3gpv0")))) (properties `((upstream-name . "BiocSet"))) (build-system r-build-system) (propagated-inputs |