gnu: Add python-setuptools/python-wheel where necessary.

Changes to pyproject-build-system require explicit dependency on
setuptools/wheel.

Change-Id: Icd7699fc1dc56e974ae7568f2ae916dbf876bea5

29 files changed, 298 insertions, 104 deletions

diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index 11e05dced9..c3101bcc86 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -56,6 +56,7 @@
   #:use-module (gnu packages linux)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
@@ -737,6 +738,7 @@ file system.")
                 "11as7n2mj3nbqsqb3ivyv9985n73i022s748qvjg36cs8ig50afx"))))
     (build-system pyproject-build-system)
     (inputs (list python-requests python-argcomplete python-urllib3 gnupg))
+    (native-inputs (list python-setuptools python-wheel))
     (arguments
      (list #:phases #~(modify-phases %standard-phases
                         (add-before 'build 'patch-gnupg
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 821be215c8..b22d2ffb57 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -682,6 +682,7 @@ memory usage.")
      (list python-numpy python-pysam))
     (inputs
      (list r-minimal))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://wlcb.oit.uci.edu/cpat/")
     (synopsis "Alignment-free distinction between coding and noncoding RNA")
     (description
@@ -2084,7 +2085,7 @@ Format (GFF) with Biopython integration.")
            python-scikit-learn
            python-scipy))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/simonvh/fluff/")
     (synopsis "Analysis and visualization of high-throughput sequencing data")
     (description
@@ -2894,6 +2895,7 @@ cells).")
            (("'argparse',") "")))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/cancerit/parabam")
     (synopsis "Parallel BAM File Analysis")
     (description "Parabam is a tool for processing sequencing files in
@@ -2962,6 +2964,7 @@ encountered in PDB files prior to simulation tasks.")
            python-tqdm
            python-typing-extensions
            python-zipp))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/haessar/peaks2utr")
     (synopsis "Python CLI for annotating three prime UTR")
     (description
@@ -3325,7 +3328,8 @@ features:
                              python-pandas
                              python-pysam
                              python-tqdm))
-    (native-inputs (list python-cython python-pytest))
+    (native-inputs (list python-cython python-pytest python-setuptools
+                         python-wheel))
     (home-page "https://github.com/KindLab/scDamAndTools")
     (synopsis "Functions for processing raw scDam&T-seq data")
     (description
@@ -3358,6 +3362,7 @@ counts.")
            python-numpy
            python-pybedtools
            python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/r3fang/SnapTools")
     (synopsis "Tools for processing snap files" )
     (description
@@ -3387,6 +3392,7 @@ operations:
     (arguments (list #:tests? #false)) ;there are none
     (propagated-inputs (list python-click python-numpy python-pandas
                              python-parabam python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/cancerit/telomerecat")
     (synopsis "Telomere computational analysis tool")
     (description "Telomerecat is a tool for estimating the average telomere
@@ -5630,7 +5636,9 @@ annotations of the genome.")
            python-pytest
            python-pytest-mock
            python-pytest-timeout
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://cutadapt.readthedocs.io/en/stable/")
     (synopsis "Remove adapter sequences from nucleotide sequencing reads")
     (description
@@ -5925,7 +5933,7 @@ accessing bigWig files.")
                  (("tests/data/" m)
                   (string-append (getcwd) "/" m))))))))
       (propagated-inputs (list python-numpy))
-      (native-inputs (list python-nose))
+      (native-inputs (list python-nose python-setuptools python-wheel))
       (home-page "https://github.com/brentp/pyfasta/")
       (synopsis "Pythonic access to fasta sequence files")
       (description
@@ -9189,7 +9197,7 @@ experiments.")
     (propagated-inputs
      (list python-cython python-numpy))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/macs3-project/MACS")
     (synopsis "Model based analysis for ChIP-Seq data")
     (description
@@ -16378,6 +16386,7 @@ mapped paired-end sequencing reads.")
            python-cython
            python-msgpack
            python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://pypi.org/project/genomic-regions/")
     (synopsis "Consistently handle genomic regions")
     (description "This package aims to simplify working with genomic region /
@@ -20999,7 +21008,9 @@ updated much more frequently.")
            python-tqdm))
     (native-inputs
      (list python-pytest
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/aertslab/ctxcore")
     (synopsis "Core functions for pycisTarget and the SCENIC tool suite")
     (description
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 6214fceb19..ccc1aee0c5 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1750,8 +1750,11 @@ supports coverage of subprocesses.")
        (sha256
         (base32 "0bdxwaak5clhsd63b9q65nf2amqqv5hfn7dskfakyldxsqnnh0y6"))))
     (build-system pyproject-build-system)
+    (native-inputs
+     (list python-pytest
+           python-setuptools
+           python-wheel))
     (propagated-inputs (list python-dotenv))
-    (native-inputs (list python-pytest))
     (home-page "https://github.com/quiqua/pytest-dotenv")
     (synopsis "Automatically detect and load a .env file before running tests")
     (description
@@ -1874,8 +1877,15 @@ contacting the real http server.")
         (base32 "1gw3a33myq9yncjixs3kkcrr1xkjzvvf3xk6x955p3i79wlwkswx"))))
     (build-system pyproject-build-system)
     (arguments (list #:tests? #false)) ;no tests included
-    (propagated-inputs (list python-attrs python-pytest))
-    (native-inputs (list python-pytest python-pytest-cov python-xmlschema))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-wheel
+           python-xmlschema))
+    (propagated-inputs
+     (list python-attrs
+           python-pytest))
     (home-page "https://github.com/pytest-dev/pytest-nunit")
     (synopsis "Pytest plugin for generating NUnit3 test result XML output")
     (description
@@ -3075,12 +3085,15 @@ mypy plugins.")
            python-pytest-cov
            python-pytest-enabler
            python-pytest-flake8
-           python-pytest-mypy))
+           python-pytest-mypy
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-jaraco-context
            python-jaraco-functools
            python-more-itertools
            python-packaging
+           python-pip
            python-pip-run
            python-tempora))
     (home-page "https://github.com/jaraco/pytest-perf")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index b68f695513..ba75fd4235 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -671,6 +671,7 @@ they exist.")
            python-strenum
            python-tomlkit
            python-typing-extensions))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/RobertCraigie/prisma-client-py")
     (synopsis "Fully type-safe database client")
     (description
@@ -5722,7 +5723,8 @@ mechanism of @code{dogpile}.")
            python-pytest-timeout
            python-pytest-xdist
            python-setuptools
-           python-trustme))
+           python-trustme
+           python-wheel))
     (home-page "https://datasette.io/")
     (synopsis "Multi-tool for exploring and publishing data")
     (description "Datasette is a tool for exploring and publishing data.
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 4cf043f7c1..c209a39384 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -191,7 +191,7 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
                 "0dpx2wmcclmd3jkprdljz3makq12vd0sjv3xnvlj5vk1lg7glb7g"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-django))
+     (list python-django python-setuptools python-wheel))
     (home-page "https://github.com/epicserve/django-cache-url")
     (synopsis "Configure Django cache settings from URLs")
     (description
@@ -229,7 +229,9 @@ with a @var{CACHE_URL} environment variable.")
            python-dj-email-url
            python-dj-search-url
            python-django-cache-url
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://django-configurations.readthedocs.io/")
     (synopsis "Helper module for organizing Django settings")
     (description
@@ -755,6 +757,7 @@ conn_max_age argument to easily enable Django’s connection pool.")
                (base32
                 "16k91rvd9889xxrrf84a3zb0jpinizhfqdmafn54zxa8kqrf7zsm"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/migonzalvar/dj-email-url")
     (synopsis "Configure email settings from URLs")
     (description
@@ -775,6 +778,7 @@ settings from URLs.")
                (base32
                 "0h7vshhglym6af2pplkyivk6y0g0ncq0xpdzi88kq2sha9c1lka2"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/dstufft/dj-search-url")
     (synopsis "Configure Haystack search from URLs")
     (description
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index c829ece846..52cec2a095 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -4786,11 +4786,18 @@ more.")
                 "0bazk3k2dyzlrh7yxs4pc76m5ysm7riia3ncg7as3xr4y9dy29bx"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest-asyncio python-pytest-runner python-asynctest
-           python-pytest-mock))
+     (list python-asynctest
+           python-pytest-asyncio
+           python-pytest-mock
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (propagated-inputs
-     (list python-aiofiles python-aiosqlite python-cryptography
-           python-importlib-metadata python-dateutil python-pytz
+     (list python-aiofiles
+           python-aiosqlite
+           python-cryptography
+           python-dateutil python-pytz
+           python-importlib-metadata
            python-sortedcontainers))
     (synopsis "OPC UA / IEC 62541 client and server library")
     (description "This package provides an OPC UA / IEC 62541 client and
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index ca829d49c4..c2bb9aa1c4 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -203,6 +203,7 @@
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-compression)
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
@@ -2640,6 +2641,7 @@ Every puzzle has a complete solution, although there may be more than one.")
                   (copy-recursively "examples" examples)))))))
       (inputs (list dds `(,python "tk")))
       (propagated-inputs (list python-colorama))
+      (native-inputs (list python-setuptools python-wheel))
       (home-page "https://github.com/anntzer/redeal")
       (synopsis
        "Deal generator for bridge card game, written in Python")
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 50decdd14a..c525a79081 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -1090,6 +1090,8 @@ for the @code{OpenStreetMap} Overpass API.")
            diffutils
            libxml2
            python-cram
+           python-setuptools
+           python-wheel
            which))
     (propagated-inputs
      (list python-lxml
@@ -1445,7 +1447,10 @@ utilities for data translation and processing.")
       ;; This test requires internet access.
       '(list "--deselect" "test_shapefile.py::test_reader_url")))
     (native-inputs
-     (list python-pytest python-pytest-runner))
+     (list python-pytest
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/GeospatialPython/pyshp")
     (synopsis "Read/write support for ESRI Shapefile format")
     (description
@@ -1551,7 +1556,9 @@ surface (i.e., gridding) with a hint of machine learning.")
            python-pytest
            python-pytest-cov
            python-pytest-mpl
-           python-pytest-xdist))
+           python-pytest-xdist
+           python-setuptools
+           python-wheel))
     (home-page "https://scitools.org.uk/cartopy/docs/latest/")
     (synopsis "Cartographic library for visualisation")
     (description
@@ -3367,6 +3374,7 @@ path loss.")
     ;; The tests are speed tests or development tests to compare results with
     ;; a different library.
     (arguments (list #:tests? #false))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/rabuchaim/geoip2fast")
     (synopsis
      "Fast GeoIP2 country/city/asn lookup library")
@@ -3423,7 +3431,11 @@ using third-party geocoders and other data sources.")
                (base32
                 "0inxyj5n4jzgg5xiadqx9sk83gdx5ff989l9s04smdzbd3b8c0c8"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest python-numpy))
+    (native-inputs
+     (list python-pytest
+           python-numpy
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/mapado/haversine")
     (synopsis "Calculate the distance between 2 points on Earth")
     (description "This package provides functions to calculate the
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 46e556ecc0..c8bd25af9c 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -526,7 +526,9 @@ graphs in Python.")
     (inputs (list igraph))
     (native-inputs
      (list python-ddt
+           python-setuptools
            python-setuptools-scm
+           python-wheel
            pkg-config))
     (home-page "https://github.com/vtraag/louvain-igraph")
     (synopsis "Implementation of the Louvain algorithm")
diff --git a/gnu/packages/libusb.scm b/gnu/packages/libusb.scm
index d5157a6eeb..1d9f9e5071 100644
--- a/gnu/packages/libusb.scm
+++ b/gnu/packages/libusb.scm
@@ -738,6 +738,7 @@ HID-Class devices.")
                           "    '" libhidapi-hidraw.so "',\n"
                           "    '" libhidapi-libusb.so "',\n")))))))))
     (inputs (list hidapi))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/apmorton/pyhidapi")
     (synopsis "Python @code{ctypes} bindings for HIDAPI library")
     (description "Python @code{ctypes} bindings for HIDAPI library.")
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 0fc2c4428a..f71830067e 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -4662,7 +4662,7 @@ time.")
                  (string-append
                   (assoc-ref inputs "kernel-headers") "/include/linux"))))))))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/gvalkov/python-evdev")
     (synopsis "Bindings to the Linux input handling subsystem")
     (description
@@ -5298,6 +5298,7 @@ SMBus access.")
                       (string-append "-L" #$(this-package-input "i2c-tools")
                                      "/lib"))))))))
     (inputs (list i2c-tools))
+    (native-inputs (list python-setuptools python-wheel))
     (synopsis "I2C/SMBus access for Python")
     (description "This package provides a Python library to access
 @acronym{I2C, Inter-Integrated Circuit} and @acronym{SMBus, System
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9d76e719ed..0a00d1a0b3 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -183,7 +183,7 @@ family of functions.")
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-scipy))
     (inputs (list fasttext))
-    (native-inputs (list pybind11))))
+    (native-inputs (list pybind11 python-setuptools python-wheel))))
 
 (define-public python-funsor
   (package
@@ -210,10 +210,12 @@ family of functions.")
                          python-pytest-xdist
                          python-requests
                          python-scipy
+                         python-setuptools
                          python-sphinx
                          python-sphinx-gallery
                          python-sphinx-rtd-theme
-                         python-torchvision))
+                         python-torchvision
+                         python-wheel))
     (home-page "https://github.com/pyro-ppl/funsor")
     (synopsis "Tensor-like library for functions and distributions")
     (description
@@ -358,7 +360,8 @@ classification.")
                         "-k" "not testJSONConversionBestEffort")))))))
     (propagated-inputs
      (list python-absl-py python-contextlib2 python-pyyaml python-six))
-    (native-inputs (list python-mock python-pytest))
+    (native-inputs (list python-mock python-pytest python-setuptools
+                         python-wheel))
     (home-page "https://github.com/google/ml_collections")
     (synopsis "Python collections designed for Machine Learning usecases")
     (description
@@ -940,6 +943,7 @@ depend on language-specific pre- or post-processing.")
          (sha256
           (base32 "018ilrp41fcclmb5lsml3aijwbmhbq3m7wy65hr1fryj0avic8fr"))))
       (build-system pyproject-build-system)
+      (native-inputs (list python-setuptools python-wheel))
       (home-page "https://github.com/sofiatolaosebikan/hopcroftkarp")
       (synopsis "Implementation of the Hopcroft-Karp algorithm")
       (description
@@ -965,7 +969,8 @@ cardinality matching from a bipartite graph.")
                              python-numpy
                              python-scikit-learn
                              python-scipy))
-    (native-inputs (list python-pytest python-pytest-cov))
+    (native-inputs (list python-pytest python-pytest-cov python-setuptools
+                         python-wheel))
     (home-page "https://persim.scikit-tda.org")
     (synopsis "Tools for analyzing persistence diagrams in Python")
     (description
@@ -996,7 +1001,11 @@ It currently houses implementations of
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-persim python-scikit-learn
                              python-scipy))
-    (native-inputs (list python-cython python-pytest))
+    (native-inputs
+     (list python-cython
+           python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://ripser.scikit-tda.org")
     (synopsis "Persistent homology library for Python")
     (description
@@ -1779,7 +1788,9 @@ computing environments.")
      (list python-cython-3
            python-pandas
            python-pytest
-           python-pytest-xdist))
+           python-pytest-xdist
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-numpy python-threadpoolctl python-scipy python-joblib))
     (home-page "https://scikit-learn.org/")
@@ -1840,7 +1851,8 @@ data analysis.")
              python-scikit-learn
              python-scipy
              python-packaging))
-      (native-inputs (list python-pytest python-pytest-cov python-cython))
+      (native-inputs (list python-pytest python-pytest-cov python-cython
+                           python-setuptools python-wheel))
       (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra")
       (synopsis "Set of tools for scikit-learn")
       (description
@@ -1905,7 +1917,8 @@ and are compatible with its API.")
                              python-srsly
                              python-typing-extensions
                              python-wasabi))
-    (native-inputs (list python-cython python-mock python-pytest))
+    (native-inputs (list python-cython python-mock python-pytest
+                         python-setuptools python-wheel))
     (home-page "https://github.com/explosion/thinc")
     (synopsis "Functional take on deep learning")
     (description
@@ -2004,7 +2017,9 @@ It is compatible with @code{scikit-learn}.")
                          python-nose
                          python-pytest
                          python-pandas
-                         python-networkx))
+                         python-networkx
+                         python-setuptools
+                         python-wheel))
     (home-page "https://github.com/scikit-learn-contrib/hdbscan")
     (synopsis "High performance implementation of HDBSCAN clustering")
     (description "HDBSCAN - Hierarchical Density-Based Spatial Clustering of
@@ -2027,7 +2042,7 @@ to return meaningful clusters (if there are any).")
        (sha256
         (base32 "0l5dpdsk5vg7rpay81bncp04119hnl5z7zxjv63jrnm9spcwwi3g"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-importlib-metadata
            python-joblib
@@ -2251,7 +2266,7 @@ Covariance Matrix Adaptation Evolution Strategy (CMA-ES) for Python.")
       (version version)
       (build-system pyproject-build-system)
       (native-inputs
-       (list python-nose python-pytest))
+       (list python-nose python-pytest python-setuptools python-wheel))
       (propagated-inputs
        (list python-future python-numpy))
       (synopsis "Efficiently computes derivatives of NumPy code")
@@ -2427,7 +2442,8 @@ discrete, and conditional dimensions.")
                             (setenv "HOME" "/tmp"))))))
     ;; DeepXDE supported backends are TensorFlow (v1 and v2), PyTorch, JAX and
     ;; PaddlePaddle.  We test with PyTorch because we have it up to date.
-    (native-inputs (list python-pytorch python-setuptools-scm))
+    (native-inputs (list python-pytorch python-setuptools
+                         python-setuptools-scm python-wheel))
     (propagated-inputs (list python-matplotlib python-numpy
                              python-scikit-learn python-scikit-optimize
                              python-scipy))
@@ -3652,7 +3668,8 @@ in a fast and accurate way.")
                 (symlink libxgboost (string-append xgbdir "/lib"
                                                    "/libxgboost.so"))))))))
     (native-inputs
-     (list python-pandas python-pytest python-scikit-learn))
+     (list python-pandas python-pytest python-scikit-learn python-setuptools
+           python-wheel))
     (inputs
      (list xgboost))
     (propagated-inputs
@@ -4007,7 +4024,7 @@ methodxs at scale on CPU or GPU.")
           (add-before 'check 'set-numba-cache-dir
             (lambda _
               (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-numba
            python-numpy
@@ -5038,6 +5055,7 @@ Neural Networks for a wide range of applications related to structured data.")
                              python-urllib3
                              python-uvicorn
                              python-websocket-client))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://lightning.ai")
     (synopsis "Lightning Cloud command line client")
     (description "This package provides a command line interface for Lightning
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index cc4aeed24e..dd94292f69 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -1177,12 +1177,16 @@ simultaneously and therefore appear under the same nickname on IRC.")
           (replace 'check
             (lambda* (#:key tests? #:allow-other-keys)
               (when tests? (invoke "python" "-m" "unittest" "-v")))))))
+    (native-inputs
+     (list python-setuptools
+           python-wheel))
     (inputs
      (list glib
            glib-networking
            libsoup-minimal
            python-gssapi
            python-idna
+           python-packaging
            python-precis-i18n
            python-pygobject))
     (synopsis "Non-blocking XMPP Module")
diff --git a/gnu/packages/patool.scm b/gnu/packages/patool.scm
index 6d71c3c472..ddf288cd90 100644
--- a/gnu/packages/patool.scm
+++ b/gnu/packages/patool.scm
@@ -69,16 +69,18 @@
            dpkg
            file
            flac
-           libarchive ;for bsdtar
            lhasa
+           libarchive ;for bsdtar
            lrzip
            lzip
            lzop
-           python-pytest
            p7zip
            pbzip2
            pigz
            plzip
+           python-pytest
+           python-setuptools
+           python-wheel
            rpm))
     (home-page "https://wummel.github.io/patool/")
     (synopsis "Portable archive file manager")
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index e08b478c22..c8bb094b0a 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -629,6 +629,7 @@ into Python programs easier.")
                      ;; XXX: Does this cross-compile?
                      (patch-shebang script)))))))
     (propagated-inputs (list python-clingo))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://potassco.org/")
     (synopsis "Solve probabilistic logic programs")
     (description "This package provides a system to solve probabilistic
@@ -714,6 +715,9 @@ as logic programs.")
                    ;; XXX: python-clingo-dl installs clingodl instead…
                    (("clingo-dl") "clingodl"))))))
    (build-system pyproject-build-system)
+   (native-inputs
+    (list python-setuptools
+          python-wheel))
    (propagated-inputs
     (list python-clingo
           python-clingo-dl
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 3d8fe98bd4..a640f7c2de 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -108,6 +108,7 @@
        (sha256
         (base32 "0cs8xya465wvb9dw0kdl7cvkxwrslhbma66y44r1mmsajcll7imc"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/assertpy/assertpy")
     (synopsis "Simple assertion library for unit testing")
     (description
diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm
index 3c15b1b682..1838d97a0d 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -388,6 +388,7 @@ and decompression by implementing Python bindings for the ISA-L library.")
                 "1qiwmavmxy6ba89mrdkzk52hqrd4awnp4yca395pxp2np66pf81g"))))
     ;; FIXME: Unbundle ls-qpack and xxhash!
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/aiortc/pylsqpack")
     (synopsis "Python bindings for @code{ls-qpack}")
     (description
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 58d00966e3..114af38814 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -725,7 +725,11 @@ cross-validation.")
                     (lambda* (#:key tests? #:allow-other-keys)
                       (when tests?
                         (invoke "tdda" "test")))))))
-    (native-inputs (list python-numpy python-pandas))
+    (native-inputs
+     (list python-numpy
+           python-pandas
+           python-setuptools
+           python-wheel))
     (home-page "https://www.stochasticsolutions.com")
     (synopsis "Test-driven data analysis library for Python")
     (description
@@ -933,7 +937,9 @@ density maps, both for interactive and non-interactive use.")
            python-cppheaderparser
            python-pytest
            python-pyyaml
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs (list python-numpy python-scipy))
     (home-page "https://github.com/pyamg/pyamg")
     (synopsis "Algebraic Multigrid Solvers in Python")
@@ -1080,6 +1086,8 @@ tissue-specificity metrics for gene expression.")
            python-pytest
            python-pytest-mock
            python-pytest-xdist
+           python-setuptools
+           python-wheel
            ;; Needed to test clipboard support.
            xorg-server-for-tests))
     (home-page "https://pandas.pydata.org")
@@ -1318,7 +1326,9 @@ a convention of suggesting best recommended practices for using
            python-numpy
            python-pytest
            python-pytest-cov
-           python-pytest-xdist))
+           python-pytest-xdist
+           python-setuptools
+           python-wheel))
     (home-page "https://nalepae.github.io/pandarallel/")
     (synopsis "Tool to parallelize Pandas operations across CPUs")
     (description
@@ -1465,6 +1475,8 @@ production-critical data pipelines or reproducible research settings.  With
                          ;; Optional imports. We do not propagate them due to
                          ;; their size.
                          python-numba ;speedup of joins
+                         python-setuptools
+                         python-wheel
                          rdkit)) ;chemistry submodule
     (home-page "https://github.com/pyjanitor-devs/pyjanitor")
     (synopsis "Tools for cleaning and transforming pandas DataFrames")
@@ -1591,7 +1603,8 @@ Python module with the same interface, but (hopefully) faster.")
            python-scikit-learn
            python-scipy))
     (native-inputs
-     (list python-pytest python-pytest-cov))
+     (list python-pytest python-pytest-cov python-setuptools
+           python-wheel))
     (home-page "https://github.com/johannfaouzi/pyts")
     (synopsis "Python package for time series classification")
     (description
@@ -1642,7 +1655,8 @@ written in C.")
                 "01g21v91f4d66xd0bvap0n6d6485w2fnq1636gx6h2s42550rlbd"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-importlib-metadata python-numpy))
-    (native-inputs (list python-pytest python-sympy))
+    (native-inputs (list python-pytest python-setuptools python-sympy
+                         python-wheel))
     (home-page "https://numpoly.readthedocs.io/en/master/")
     (synopsis "Polynomials as a numpy datatype")
     (description "Numpoly is a generic library for creating, manipulating and
@@ -2169,7 +2183,11 @@ annotations on an existing boxplots and barplots generated by seaborn.")
                              python-numpy
                              python-sympy))
     ;; Pint is optional, but we do not propagate it due to its size.
-    (native-inputs (list python-pint python-pytest python-setuptools-scm))
+    (native-inputs
+     (list python-pint
+           python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://unyt.readthedocs.io")
     (synopsis "Library for working with data that has physical units")
     (description
@@ -2993,7 +3011,9 @@ to do spectral analysis in Python.")
            python-pandas
            python-nose
            python-pytest
-           python-xarray))
+           python-setuptools
+           python-xarray
+           python-wheel))
     (home-page "https://github.com/jupyter-widgets/traittypes")
     (synopsis "Trait types for NumPy, SciPy and friends")
     (description "The goal of this package is to provide a reference
@@ -3267,7 +3287,7 @@ science including tools for accessing data sets in Python.")
                 "12i68jj9n1qj9phjnj6f0kmfhlsd3fqjlk9p6d4gs008azw5m8yn"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy))
-    (native-inputs (list pybind11 python-pytest))
+    (native-inputs (list pybind11 python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/nschloe/pyfma")
     (synopsis "Fused multiply-add for Python")
     (description "@code{pyfma} provides an implementation of fused
@@ -3311,7 +3331,7 @@ functions, convolutions, artificial neural networks etc.")
                     " and not TestDatasetOverlayArray"
                     " and not TestReader"
                     " and not test_filewriter.py"))))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-flit-core))
     (inputs (list gdcm libjpeg-turbo))
     (propagated-inputs (list python-numpy python-pillow))
     (home-page "https://github.com/pydicom/pydicom")
@@ -3357,7 +3377,7 @@ data.")
 import six
 ")))))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pandas))
+    (native-inputs (list python-pandas python-setuptools python-wheel))
     (propagated-inputs (list python-numpy python-scipy python-six
                              python-tables))
     (home-page "https://github.com/uchicago-cs/deepdish")
@@ -3583,7 +3603,8 @@ NeuroML2 models.")
                     " and not test_pr_level_patient"
                     " and not test_pr_level_series"
                     " and not test_scp_cancelled"))))
-    (native-inputs (list python-pyfakefs python-pytest))
+    (native-inputs (list python-pyfakefs python-pytest python-setuptools
+                         python-wheel))
     (propagated-inputs (list python-pydicom python-sqlalchemy))
     (home-page "https://github.com/pydicom/pynetdicom")
     (synopsis "Python implementation of the DICOM networking protocol")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3be51c3299..d09bce4410 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -222,11 +222,13 @@
            python-pytest-rerunfailures
            python-pytest-vcr
            python-pytest-xdist
+           python-setuptools
            python-types-requests
            python-types-toml
            python-types-urllib3
            python-typing-extensions
-           python-urllib3))
+           python-urllib3
+           python-wheel))
     (home-page "https://github.com/huggingface/huggingface_hub")
     (synopsis "Client library for accessing the huggingface.co hub")
     (description
@@ -330,7 +332,9 @@ reusable library for parsing, manipulating, and generating URIs.")
                          python-pytest-checkdocs
                          python-pytest-cov
                          python-pytest-enabler
-                         python-pytest-mypy))
+                         python-pytest-mypy
+                         python-setuptools
+                         python-wheel))
     (home-page "https://github.com/jaraco/portend")
     (synopsis "Monitor TCP ports for bound or unbound states")
     (description
@@ -635,7 +639,7 @@ using @url{https://github.com/saghul/pycares,pycares}.")
                (base32
                 "1xbfa4gmlmyj6bihdl5p4mr7nd6z79rfi92wcqkmcy4f643frivr"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (inputs (list openssl))
     (propagated-inputs
      (list python-certifi python-pylsqpack python-pyopenssl))
@@ -1539,6 +1543,7 @@ content using a variety of algorithms.")
                 "138bh6x1yy0qpk63bxa7mxnd97gfdm1fkpwm8wrdz3g3z0fca79c"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-cryptography python-deprecated))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/latchset/jwcrypto")
     (synopsis "Implementation of JOSE Web standards")
     (description
@@ -1561,7 +1566,7 @@ Encryption} (JOSE) Web Standards.")
         (base32 "1vinddg8sbh3v9n1r1wmvjx6ydk8xp7scbvhb3csl4y9xz7vhk6g"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-pytest-cov))
+     (list python-pytest python-pytest-cov python-setuptools python-wheel))
     (inputs
      (list pcre))
     (home-page "https://github.com/Kronuz/pyScss")
@@ -1994,7 +1999,7 @@ C, yielding parse times that can be a thirtieth of the html5lib parse times.")
                 "1acd1a4f66gi4plqnsml7cf33qp83mxsnmnqpdwkpj7597xkvyl4"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-setuptools-scm))
+     (list python-setuptools python-setuptools-scm python-wheel))
     (home-page "https://github.com/sanic-org/html5tagger")
     (synopsis "Create HTML documents from Python")
     (description
@@ -2463,7 +2468,7 @@ cssutils not receiving updates as of 1.0.2.")
                 "1x4nrvb1p1byi1whmspik7lbh303akdlh762dayfxam3hycsh5kk"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-lxml python-pytest))
+     (list python-lxml python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/scrapy/cssselect")
     (synopsis "CSS3 selector parser and translator to XPath 1.0")
     (description
@@ -3743,7 +3748,8 @@ than Python’s urllib2 library.")
      (propagated-inputs (list python-cryptography
                               python-pyspnego
                               python-requests))
-    (native-inputs (list python-pytest python-pytest-mock))
+    (native-inputs (list python-pytest python-pytest-mock python-setuptools
+                         python-wheel))
     (home-page "https://github.com/requests/requests-kerberos")
     (synopsis "Kerberos authentication handler for python-requests")
     (description "This package provides a Kerberos authentication handler for
@@ -5822,7 +5828,7 @@ for URL parsing and changing.")
                 "1vbd3ndhmxi8scxgxs6sc7r0rdaliqd80384n06nyb3haqz25inm"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-arrow python-pytz python-requests))
-    (native-inputs (list python-requests-mock))
+    (native-inputs (list python-requests-mock python-setuptools python-wheel))
     (home-page "https://github.com/ucfopen/canvasapi")
     (synopsis "API wrapper for the Canvas LMS")
     (description
@@ -7963,6 +7969,7 @@ as a Python package.")
      ;; PyPi sources does not contain tests, recursive dependency on
      ;; python-sanic.
      (list #:tests? #f))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/sanic-org/sanic-routing/")
     (synopsis "Routing component for Sanic")
     (description "Internal package for @code{python-sanic}, which provides
@@ -7985,6 +7992,7 @@ the @code{BasicRouter}.")
      ;; python-sanic.
      (list #:tests? #f))
     (propagated-inputs (list python-httpx python-sanic-bootstrap))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/sanic-org/sanic-testing/")
     (synopsis "Test clients for Sanic")
     (description "Internal package for @code{python-sanic}, which is
@@ -8081,7 +8089,7 @@ fast.  It allows the usage of the @code{async/await} syntax added in Python
      (inherit python-sanic)
      (name "python-sanic-bootstrap")
      (arguments (list #:tests? #f))
-     (native-inputs '())))
+     (native-inputs (list python-setuptools python-wheel))))
 
 (define-public python-socketio
   (package
@@ -8617,7 +8625,7 @@ GCS, Azure Blob Storage, gzip, bz2, etc.)")
          "1cd4b3w5g3pfccsg79kjj27fwi216ip927rjq7isp8pfjzlp8nzd"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/scrapy/w3lib")
     (synopsis "Python library of web-related functions")
     (description
@@ -8914,7 +8922,7 @@ by asyncio.")
             python-typing-extensions
             python-w3lib))
     (native-inputs
-      (list python-psutil python-pytest))
+      (list python-psutil python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/scrapy/parsel")
     (synopsis "Extract data from HTML and XML using XPath and CSS selectors")
     (description "Parsel is a library to extract and remove data from
@@ -9717,7 +9725,8 @@ hardware on Grid'5000 or via OpenStack, to Vagrant, Chameleon, and more.")
                             ;; Integration tests depend on docker.
                             (delete-file-recursively "tests/integration"))))))
     (propagated-inputs (list python-requests))
-    (native-inputs (list python-pytest python-pyyaml python-setuptools-scm))
+    (native-inputs (list python-pytest python-pyyaml python-setuptools
+                         python-setuptools-scm python-wheel))
     (home-page "https://github.com/netbox-community/pynetbox")
     (synopsis "NetBox API client library")
     (description "Python module to query and edit data stored in a
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2726725707..32522f1916 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1036,7 +1036,7 @@ dictionary, can be convert to a dictionary, and is ordered by insertion.")
                (base32
                 "058sah2nyg44xq5wxywlzc3abzcv9fifnlvsflwma9mfp01nw0ab"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-poetry-core))
+    (native-inputs (list python-poetry-core python-setuptools))
     (home-page "https://github.com/pawelzny/dotty_dict")
     (synopsis "Python library for accessing dictionaries using a dot syntax")
     (description "This package provides a library that wraps the traditional
@@ -1786,7 +1786,7 @@ Markdown.  All extensions are found under the module namespace of pymdownx.")
     (native-inputs
      (list python-pytest python-pytest-benchmark python-pytest-cov
            python-pytest-mpl python-pytest-subtests
-           python-setuptools-scm))
+           python-setuptools python-setuptools-scm python-wheel))
     (propagated-inputs
      (list python-typing-extensions
            python-uncertainties))
@@ -1893,7 +1893,8 @@ the versioning system in PEP 517 build frontends.")
       ;; This fails because portserver ends up in bin, not site-packages
       '(list "--ignore=src/tests/portserver_test.py")))
     (propagated-inputs (list python-psutil))
-    (native-inputs (list python-pytest net-tools))
+    (native-inputs (list python-pytest python-setuptools python-wheel
+                         net-tools))
     (home-page "https://github.com/google/python_portpicker")
     (synopsis "Choose unique available network ports")
     (description
@@ -2282,6 +2283,7 @@ of a loop structure or other iterative computation.")
            python-requests
            python-shellescape
            python-webcolors))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/phseiff/github-flavored-markdown-to-html/")
     (synopsis "Github-flavored Markdown")
     (description
@@ -3040,7 +3042,7 @@ concepts.")
         (base32 "11pgxsqap9l7jsf52649q9mpj8a0w6p9im929lpr9s26ynnnn6ks"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-h5py python-numpy))
-    (native-inputs (list python-nose))
+    (native-inputs (list python-nose python-setuptools python-wheel))
     (home-page "https://github.com/frejanordsiek/hdf5storage")
     (synopsis "Read and write Python data types from and to HDF5 files")
     (description
@@ -3070,6 +3072,7 @@ untrusted sources, pickling is avoided in this package.")
                  (base32
                   "1qfqnhvfx5mm7bdajjnnagmvns1zxyksjzh3k5la2ag6a8bp5gki"))))
       (build-system pyproject-build-system)
+      (native-inputs (list python-setuptools python-wheel))
       (home-page "https://github.com/hjson/hjson-py")
       (synopsis "Python package to parse HJSON documents")
       (description "This package provides a Python library and a command-line
@@ -3363,7 +3366,7 @@ conventions and aliases in the same expression.")
                 (("os\\.environ\\.get\\('WAND_MAGICK_LIBRARY_SUFFIX'\\)")
                  "\".Q16\"")))))))
     (native-inputs
-     (list python-pytest))
+     (list python-setuptools python-pytest python-wheel))
     (inputs
      (list imagemagick))
     (home-page "https://docs.wand-py.org/")
@@ -5908,7 +5911,9 @@ compare, diff, and patch JSON and JSON-like structures in Python.")
            python-coveralls
            python-pytest
            python-pytest-cov
-           python-tox))
+           python-setuptools
+           python-tox
+           python-wheel))
     (propagated-inputs (list python-pyparsing))
     (home-page "https://github.com/shinichi-takii/ddlparse")
     (synopsis "Parses and converts DDL to BigQuery JSON schema")
@@ -7388,7 +7393,7 @@ software version simply.")
     (propagated-inputs
      (list python-wrapt))
     (native-inputs
-     (list python-bumpversion python-pytest))
+     (list python-bumpversion python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/tantale/deprecated")
     (synopsis "Python decorator to deprecate classes, functions or methods")
     (description "The @code{deprecated} decorator provides a convenient way to deprecate
@@ -9025,7 +9030,7 @@ color scales, and color space conversion easy.  It has support for:
                 "1ps34laa0kvvp33az173hp5l0hnk8cr0bfqmlgw64ry5cv09qjg0"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-pytest-mock))
+     (list python-pytest python-pytest-mock python-setuptools python-wheel))
     (propagated-inputs
      (list python-cryptography python-gssapi python-krb5 python-ruamel.yaml))
     (home-page "https://github.com/jborean93/pyspnego")
@@ -9574,8 +9579,10 @@ tests = True~%" #$(this-package-input "tcl") #$(this-package-input "tk"))))))
            python-pytest
            python-pytest-timeout
            python-pytest-xdist
+           python-setuptools
            python-setuptools-scm
-           python-setuptools-scm-git-archive))
+           python-setuptools-scm-git-archive
+           python-wheel))
     (home-page "https://matplotlib.org/")
     (synopsis "2D plotting library for Python")
     (description
@@ -9774,6 +9781,7 @@ complex-valued functions.")
      (list
       #:tests? #f))     ; no tests
     (propagated-inputs (list python-ply))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "http://senexcanis.com/open-source/cppheaderparser/")
     (synopsis
      "Parse C++ header files and generate a data structure representing the class")
@@ -9793,6 +9801,7 @@ and generate a data structure representing the class.")
        (sha256
         (base32 "06zysv86j7wqb1rl88ab4clbjf7iahhv9gfyqlasr18hggqkpd43"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/nucleic/cppy")
     (synopsis "C++ header library for Python extension modules")
     (description "This package is a small C++ header library which makes it
@@ -10377,7 +10386,7 @@ retrieve text and metadata from PDFs as well as merge entire files together.")
                       "--exclude=^test_use_poppler_path_with_trailing_slash$")))
     (propagated-inputs (list python-pillow))
     (inputs (list poppler))
-    (native-inputs (list python-nose which))
+    (native-inputs (list python-nose which python-setuptools python-wheel))
     (home-page "https://github.com/Belval/pdf2image")
     (synopsis
      "Python wrapper around @command{pdftoppm} and @command{pdftocairo}")
@@ -10865,7 +10874,9 @@ experimental data and metadata at the Laboratory for Fluorescence Dynamics.")
            python-editorconfig
            python-numpy
            python-pillow
-           python-pytest))
+           python-pytest
+           python-setuptools
+           python-wheel))
     (inputs
      ;; XXX: Build is failing with FFmpeg 6.0, unresolved upstream.
      ;; See https://github.com/PyAV-Org/PyAV/issues/1106
@@ -11292,7 +11303,9 @@ any machine that can run Python.")
       (list pkg-config
             python-cython
             python-pytest
-            python-pytest-cov))
+            python-pytest-cov
+            python-setuptools
+            python-wheel))
     (inputs
      (list pango))
     (home-page "https://manimpango.manim.community/")
@@ -11777,7 +11790,8 @@ older Python versions.")
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-dataclasses python-smart-open python-typer))
-    (native-inputs (list python-mock python-pytest))
+    (native-inputs (list python-mock python-pytest python-setuptools
+                         python-wheel))
     (home-page "https://github.com/justindujardin/pathy")
     (synopsis "Path interface for local and cloud bucket storage")
     (description "Pathy is a python package (with type annotations) for
@@ -12022,7 +12036,9 @@ class constructs.")
                          python-pytest-checkdocs
                          python-pytest-cov
                          python-pytest-enabler
-                         python-pytest-mypy))
+                         python-pytest-mypy
+                         python-setuptools
+                         python-wheel))
     (home-page "https://github.com/jaraco/jaraco.collections")
     (synopsis "Provides various collection objects")
     (description
@@ -12251,7 +12267,9 @@ releases.")
                          python-pytest-checkdocs
                          python-pytest-cov
                          python-pytest-enabler
-                         python-pytest-mypy))
+                         python-pytest-mypy
+                         python-setuptools
+                         python-wheel))
     (home-page "https://github.com/jaraco/jaraco.text")
     (synopsis "Provides various routines for text manipulation")
     (description
@@ -13723,7 +13741,7 @@ algorithm.")
        (sha256
         (base32 "01j48np3g50g6insjkszsz0vifwlm6gspria5vdwlkbciywznnhv"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://altgraph.readthedocs.io")
     (synopsis "Python graph network package")
     (description
@@ -14026,7 +14044,9 @@ Python style, together with a fast and comfortable execution environment.")
            python-wrapper
            python-pytest
            python-pandas
-           python-requests-mock))))
+           python-requests-mock
+           python-setuptools
+           python-wheel))))
 
 (define-public python-pyqrcode
   (package
@@ -15598,6 +15618,7 @@ add functionality and customization to your projects with their own plugins.")
         (base32 "1zrfr1shin5wyfnfxc7jpk013594wasrp4ni9l70fhjlf2mvb3w7"))))
     (build-system pyproject-build-system)
     (arguments (list #:tests? #false)) ;there are none.
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/irgeek/StrEnum")
     (synopsis "Enum that inherits from str")
     (description "StrEnum is a Python @code{enum.Enum} that inherits from
@@ -15835,6 +15856,7 @@ should be stored on various operating systems.")
         (base32 "0vm1r1jlaiagj0l9yf7j6zn9w3733dr2169911c0svgrr3gwiwn9"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-six))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/google/pasta")
     (synopsis "AST-based Python refactoring library")
     (description "This package provides \"pasta\", an AST-based Python
@@ -16388,7 +16410,7 @@ designed to efficiently cope with extremely large amounts of data.")
     (build-system pyproject-build-system)
     (propagated-inputs (list python-deprecated))
     (native-inputs (list python-coverage python-coveralls python-nose2
-                         python-numpy))
+                         python-numpy python-setuptools python-wheel))
     (home-page "https://github.com/scottgigante/tasklogger")
     (synopsis "Extension to the core Python logging library")
     (description "This package provides an extension to the core Python
@@ -21618,7 +21640,8 @@ underscored string.")
         (base32 "1jivws8dsscsmyqngbc71r4qw8qmn98pqmhylz01r5dd1ljfw9bi"))))
     (build-system pyproject-build-system)
     (inputs (list mit-krb5))
-    (native-inputs (list python-cython python-k5test python-pytest))
+    (native-inputs (list python-cython python-k5test python-pytest
+                         python-setuptools python-wheel))
     (home-page "https://github.com/jborean93/pykrb5")
     (synopsis "Kerberos API bindings for Python")
     (description "This library provides Python functions that wraps the
@@ -22739,7 +22762,8 @@ etc.")
       #:test-flags
       '(list "--ignore=pymemcache/test/test_compression.py")))
     (native-inputs
-     (list python-faker python-pytest python-pytest-cov))
+     (list python-faker python-pytest python-pytest-cov python-setuptools
+           python-wheel))
     (home-page "https://github.com/pinterest/pymemcache")
     (synopsis "Comprehensive, fast, pure Python memcached client")
     (description
@@ -23040,7 +23064,8 @@ completes.")
        (sha256
         (base32 "0x57idiy19lzyn32klgm06r223z8gr2aqqk91gysbshq7jg8g3pf"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest python-pytest-asyncio))
+    (native-inputs (list python-pytest python-pytest-asyncio
+                         python-setuptools python-wheel))
     (home-page "https://github.com/simonw/asyncinject")
     (synopsis
      "Run async workflows using pytest-fixtures-style dependency injection")
@@ -23352,6 +23377,7 @@ JSON) codec.")
         (base32 "16ynrq245c3nywv476izrc4bcacm9gxjzgr67ng91g929ny6bfl4"))))
     (build-system pyproject-build-system)
     (arguments (list #:tests? #false))  ;there are none
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/fchollet/namex")
     (synopsis
      "Separate implementation and public API surface of Python packages")
@@ -23687,6 +23713,7 @@ from the header, as well as section details and data available.")
         (base32
          "0jndjx26p8qibrx997p3kb6vfbqbdxkv74jsrkav177vmx2085b9"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/shibukawa/imagesize_py")
     (synopsis "Gets image size of files in various formats in Python")
     (description
@@ -25810,7 +25837,9 @@ web frameworks.")
            python-flex
            python-marshmallow
            python-pytest
-           python-pytest-cov))
+           python-pytest-cov
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/rochacbruno/flasgger/")
     (synopsis "Extract Swagger specs from your Flask project")
     (description "@code{python-flasgger} allows extracting Swagger specs
@@ -26147,7 +26176,9 @@ design and layout.")
           "15v2mycr7m4ld5wp1sl9flqjjv8zdgc5rkgfz1wxn44d74skixsx"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-wheel))
+     (list python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://code.launchpad.net/~tseaver/pkginfo/trunk")
     (synopsis "Query metadatdata from sdists, bdists, and installed packages")
     (description
@@ -26261,7 +26292,7 @@ interpreter when it prints a stack trace.")
                (base32
                 "0jwy5wwl0rcsgnx7hhq4z7ji3lx271sar4v2a1rmyh5vsj7sn784"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-setuptools-scm))
+    (native-inputs (list python-setuptools python-setuptools-scm python-wheel))
     (propagated-inputs (list python-html5tagger))
     (home-page "https://github.com/sanic-org/tracerite")
     (synopsis "Human-readable HTML tracebacks")
@@ -26393,6 +26424,7 @@ Git.")
     (arguments '(#:tests? #f))          ;no tests
     (propagated-inputs
      (list python-semantic-version python-typing-extensions))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/PyO3/setuptools-rust")
     (synopsis "Setuptools plugin for Rust extensions")
     (description
@@ -26711,7 +26743,7 @@ such as lines length, trailing spaces, indentation, etc.")
     (propagated-inputs
      (list python-importlib-metadata python-platformdirs python-tomli))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/google/yapf")
     (synopsis "Formatter for Python code")
     (description "YAPF is a formatter for Python code.  It's based off of
@@ -27136,7 +27168,9 @@ with PEP 484 argument (and return) type annotations.")
     (build-system pyproject-build-system)
     (arguments
      '())
-    (propagated-inputs (list python-typing-extensions))))
+    (propagated-inputs (list python-typing-extensions))
+    (native-inputs (modify-inputs (package-native-inputs python-typeguard)
+                                  (append python-setuptools python-wheel)))))
 
 (define-public bpython
   (package
@@ -28020,7 +28054,8 @@ and corruption checks.")
                     (lambda* (#:key tests? #:allow-other-keys)
                       (when tests?
                         (invoke "pytest")))))))
-    (native-inputs (list python-diskcache python-more-itertools python-pytest))
+    (native-inputs (list python-diskcache python-more-itertools
+                         python-setuptools python-pytest python-wheel))
     (home-page "https://github.com/harlowja/fasteners")
     (synopsis "Python package that provides useful locks")
     (description
@@ -29711,7 +29746,7 @@ and dates in \"human readable\" forms.  For example, it would display
           "017p9x0bssf7g9slmf30ddh1baawsmxas4nivx334pkfjxp23agr"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-twisted))
+     (list python-pytest python-setuptools python-twisted python-wheel))
     (home-page "https://github.com/crossbario/txaio")
     (synopsis "Compatibility layer between Python asyncio and Twisted")
     (description "Txaio provides a compatibility layer between the Python
@@ -31291,7 +31326,7 @@ lowercase.")
              (setenv "PYTHONPATH"
                      (string-append (getcwd) "/code:"
                                     (getenv "GUIX_PYTHONPATH"))))))))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/drj11/pypng")
     (synopsis "Pure Python PNG image encoder/decoder")
     (description
@@ -33378,6 +33413,7 @@ class.")
            python-av
            python-numpy
            python-pillow))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/damiafuentes/DJITelloPy")
     (synopsis
      "DJI Tello drone video streaming, swarms and state packets library")
@@ -33478,7 +33514,8 @@ EDU SDK.  This library has the following features:
                 (invoke "pycodestyle" "--max-line-length=88"
                         "git_version.py" "versioneer.py")))))))
     (native-inputs
-     (list git python-flake8 python-pycodestyle python-pyflakes))
+     (list git python-flake8 python-pycodestyle python-pyflakes
+           python-setuptools python-wheel))
     (propagated-inputs
      (list python-tomli))
     (home-page "https://github.com/python-versioneer/python-versioneer")
@@ -35191,7 +35228,7 @@ function implementations based on the types of the arguments.")
        (sha256
         (base32 "07xv92q7f4bkp6dzkqvcv0zxr11729qdak4s3ldmbhdwgsf44g5h"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/coady/multimethod")
     (synopsis "Python support for multiple argument dispatching")
     (description
@@ -36003,7 +36040,7 @@ Python @code{set} interface.")
            python-ruamel.yaml-0.16 python-toml python-tomli))
     (native-inputs
      (list python-django python-flask python-pytest python-pytest-cov
-           python-pytest-mock))
+           python-pytest-mock python-setuptools python-wheel))
     (home-page "https://www.dynaconf.com/")
     (synopsis "The dynamic configurator for your Python project")
     (description
@@ -36180,7 +36217,7 @@ of several plugins.")
     (arguments (list #:test-flags '(list "-k" "not test_execute")))
     (propagated-inputs
      (list python-cloudpickle python-importlib-metadata))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://pydoit.org")
     (synopsis "Automation tool to execute any kind of task in a build-tools
 fashion")
@@ -36234,6 +36271,7 @@ to:
     (build-system pyproject-build-system)
     (arguments (list #:tests? #false)) ;no tests
     (propagated-inputs (list python-doit python-rich-click))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/pydoit/pydevtool")
     (synopsis "CLI dev tools powered by pydoit")
     (description "This package provides command line tools, powered by pydoit.
@@ -37074,7 +37112,7 @@ implementing a pre-defined interface.")
         (sha256
           (base32 "0j2aw4ipalj208594x80blpgkh1i63gqqa4nb67b823av9hirn11"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-itemadapter python-jmespath python-parsel python-w3lib))
     (home-page "https://github.com/scrapy/itemloaders")
@@ -38304,6 +38342,7 @@ interfaces.")
         (base32 "0fdp90mzy0sd4kyw8kd8kybd1ni765fvqn8hz2wx5sqbjjkm4d5k"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-cffi python-typing-extensions))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/mideind/BinPackage")
     (synopsis
      "Vocabulary of the modern Icelandic language, in a Python package")
@@ -38356,6 +38395,7 @@ with one function call.  IceCream makes print debugging a little sweeter.")
         (base32 "1ajcjngvr4rlgb0q6p6vjz2sncwhvq3msjy6qaiz5g37vgvw2ij8"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-cffi))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/mideind/Icegrams")
     (synopsis "Trigram statistics for Icelandic")
     (description
diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm
index 9a02a71d81..ed173eb861 100644
--- a/gnu/packages/rdf.scm
+++ b/gnu/packages/rdf.scm
@@ -468,6 +468,7 @@ C++ library as well as various command-line tools to to work with HDT.")
     (build-system pyproject-build-system)
     (arguments (list #:tests? #f)) ;no test suite
     (propagated-inputs (list python-html5lib python-rdflib python-requests))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://www.w3.org/2012/pyRdfa/")
     (synopsis "RDFa Python distiller/parser library")
     (description "This library can extract RDFa 1.1 from (X)HTML, SVG, or XML.
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index 80dee15726..5effa5909d 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -945,6 +945,7 @@ game development and other performance-critical applications.")
        (sha256
         (base32 "11gzc7mhl984248q6abz5rrsph76j0y99mwk24xc90sxpcxr2j59"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://google.github.io/flatbuffers/")
     (synopsis "FlatBuffers serialization for Python")
     (description "This package provides the @code{FlatBuffers} serialization
diff --git a/gnu/packages/sourcehut.scm b/gnu/packages/sourcehut.scm
index 9222101b84..00557e5b2e 100644
--- a/gnu/packages/sourcehut.scm
+++ b/gnu/packages/sourcehut.scm
@@ -74,6 +74,7 @@
            python-requests
            python-sqlalchemy
            python-sqlalchemy-utils))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://git.sr.ht/~sircmpwn/core.sr.ht")
     (synopsis "Shared code for all sourcehut projects")
     (description
@@ -104,6 +105,7 @@
             (lambda _ (setenv "PKGVER" #$version))))))
     (propagated-inputs
      (list python-core-sr-ht))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://git.sr.ht/~sircmpwn/scm.sr.ht")
     (synopsis "Shared support code for sr.ht source control services")
     (description
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index aee7ff3809..851e18036e 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -179,7 +179,11 @@ sources.")
                 "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v"))))
     (propagated-inputs
      (modify-inputs (package-propagated-inputs python-sphinx)
-       (replace "python-docutils" python-docutils-0.15)))))
+       (replace "python-docutils" python-docutils-0.15)))
+    (native-inputs
+     (modify-inputs (package-native-inputs python-sphinx)
+       (delete python-flit-core)
+       (append python-setuptools python-wheel)))))
 
 (define-public python-sphinxcontrib-apidoc
   (package
@@ -238,6 +242,7 @@ Apple help books.")
                 "1jaihs22d8jfvk1fnv5j7hcza89hxj979ib0b4mh130cr53mmicy"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-sphinx))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/pradyunsg/sphinx-basic-ng")
     (synopsis "Modernised skeleton for Sphinx themes")
     (description
@@ -637,7 +642,9 @@ integrate Sphinx documents in web templates and to handle searches.")
            python-pillow
            python-pytest
            python-pytest-cov
-           python-sphinx))
+           python-setuptools
+           python-sphinx
+           python-wheel))
     (home-page "https://sphinx-gallery.github.io/stable/index.html")
     (synopsis "Generate an examples gallery automatically")
     (description
@@ -732,6 +739,7 @@ introspection of @code{zope.interface} instances in code.")
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-pygments))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://alabaster.readthedocs.io/")
     (synopsis "Configurable sidebar-enabled Sphinx theme")
     (description "Alabaster is a visually (c)lean, responsive, configurable
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 1c1164b432..98745c93e1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2469,7 +2469,8 @@ inference (VI) algorithms.")
                 (("\"error::DeprecationWarning\",") "")))))))
     (propagated-inputs (list python-importlib-metadata python-numpoly
                              python-numpy python-scipy))
-    (native-inputs (list python-pytest python-scikit-learn))
+    (native-inputs (list python-pytest python-scikit-learn python-setuptools
+                         python-wheel))
     (home-page "https://chaospy.readthedocs.io/en/master/")
     (synopsis "Numerical tool for performing uncertainty quantification")
     (description "Chaospy is a numerical toolbox for performing uncertainty
@@ -2593,7 +2594,8 @@ Meier, Nelson Aalen and regression.")
       #:test-flags
       '(list "-k" (string-append "not test_correct_results"
                                  " and not test_correct_results_binary"))))
-    (native-inputs (list python-pandas python-pytest))
+    (native-inputs (list python-pandas python-pytest python-setuptools
+                         python-wheel))
     (propagated-inputs (list python-numpy python-scikit-learn))
     (home-page "https://github.com/scikit-learn-contrib/MAPIE")
     (synopsis "Module for estimating prediction intervals")
@@ -2621,7 +2623,9 @@ conformal prediction methods intervals.")
     (native-inputs (list python-coverage
                          python-pytest
                          python-pytest-cov
-                         python-setuptools-scm))
+                         python-setuptools
+                         python-setuptools-scm
+                         python-wheel))
     (home-page "https://emcee.readthedocs.io/en/stable/")
     (synopsis "Ensemble sampling toolkit for MCMC")
     (description
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 60ea8e993e..1254d48741 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -1232,8 +1232,14 @@ the terminal.  It also supports IPython/Jupyter.")
                    (substitute* "requirements-dev.txt"
                      (("(.*)==(.*)$" _ dep ver)
                       (string-append dep ">=" ver))))))))
+    (native-inputs
+     (list python-coverage
+           python-nose
+           python-pylint
+           python-setuptools
+           python-tox
+           python-wheel))
     (propagated-inputs (list python-colorama))
-    (native-inputs (list python-coverage python-nose python-pylint python-tox))
     (home-page "https://github.com/manrajgrover/py-log-symbols")
     (synopsis "Python library with graphical symbols for logging on the terminal")
     (description "This package provides a Python library with graphical symbols
@@ -1260,7 +1266,13 @@ purposes.")
                    (substitute* "requirements-dev.txt"
                      (("(.*)==(.*)$" _ dep ver)
                       (string-append dep ">=" ver))))))))
-    (native-inputs (list python-coverage python-nose python-pylint python-tox))
+    (native-inputs
+     (list python-coverage
+           python-nose
+           python-pylint
+           python-setuptools
+           python-tox
+           python-wheel))
     (home-page "https://github.com/manrajgrover/py-spinners")
     (synopsis "Python library with graphical spinners for the terminal")
     (description "Spinners is a Python library that contains graphical spinners
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index cb89d04bf5..c2d45239ea 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -159,7 +159,11 @@ expressions.")
                    (call-with-output-file "src/tzdata/zoneinfo/__init__.py"
                      (const #t)))))))
     (inputs (list tzdata))
-    (native-inputs (list python-pytest python-pytest-subtests))
+    (native-inputs
+     (list python-pytest
+           python-pytest-subtests
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/python/tzdata")
     (synopsis "Python wrapper of IANA time zone data")
     (description "This package provides a thin Python wrapper around tzdata.")
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 000e0ecb44..77fd9999aa 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -2365,6 +2365,7 @@ videoformats depend on the configuration flags of ffmpeg.")
                                 `("PATH" ":" prefix
                                   (,(search-input-file inputs ffm))))))))))
     (inputs (list bash-minimal ffmpeg))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/slhck/ffmpeg-progress-yield")
     (synopsis "Run an ffmpeg command with progress")
     (description "This package allows an ffmpeg command to run with progress.
@@ -2398,7 +2399,7 @@ It is usually a complement to @code{ffmpeg-normalize}.")
                          (ffm (search-input-file inputs "bin/ffmpeg")))
                      (wrap-program ffn
                        `("FFMPEG_PATH" = (,ffm)))))))))
-    (native-inputs (list python-pytest))
+    (native-inputs (list python-pytest python-setuptools python-wheel))
     (inputs (list bash-minimal ffmpeg))
     (propagated-inputs (list ffmpeg-progress-yield
                              python-colorama
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 358efba5aa..2bebe3fdcc 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -2082,7 +2082,7 @@ of people.")
                (base32
                 "0ysqylpyv17s52634wn3vrwf7y9b5ig7fdfv8vwj1272lvv68qgk"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-nose2))
+    (native-inputs (list python-nose2 python-setuptools python-wheel))
     (inputs
      (list python-jwcrypto
            python-numpy
@@ -5207,11 +5207,15 @@ their web site.")
                  (string-append indent
                                 "os.utime(os.path.join(root, file), (315619200, 315619200))\n"
                                 line))))))))
+    (native-inputs
+     (list python-setuptools
+           python-wheel))
     (inputs (list python))
     (propagated-inputs
      (list python-boto3
            python-botocore
            python-docutils
+           python-pip
            python-six
            python-virtualenv))
     (home-page "https://github.com/4dn-dcic/python-lambda")