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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-05-05 12:02:03 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-05 22:38:18 +0200 |
| commit | a4ad0a46efcea17390e0f6e3a9568597dab7af80 (patch) | |
| tree | 2a45971f7b55adcff5f2d3fd3521e0b8379d8fa7 /gnu/packages/graph.scm | |
| parent | 1b44a23503809801856e48127332a1fc95c26464 (diff) | |
gnu: python-graphtools: Fix tests.
* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests
phase.
Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
Diffstat (limited to 'gnu/packages/graph.scm')
| -rw-r--r-- | gnu/packages/graph.scm | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 8be720215e..115fe20b52 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -447,6 +447,15 @@ large networks.") (list #:phases '(modify-phases %standard-phases + (add-after 'unpack 'patch-tests + (lambda _ + ;; The warning message has changed in numpy. + (substitute* "test/test_data.py" + (("\"A sparse matrix was passed, but.*array.\",") + "\"Sparse data was passed, but dense data is required. Use '.toarray()' to convert to a dense numpy array.\",") + ;; anndata prints a warning that causes the test to fail. + (("import warnings" m) + (string-append m "\nwarnings.filterwarnings(\"ignore\")"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? |