gnu: Remove r-numbat.

This is a duplicate of a package in (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-numbat): Delete variable.

Change-Id: Ic1f5d9779a594432a0dd8bd0be9059423a2f5b34

1 files changed, 0 insertions, 72 deletions

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ead94ccb7e..d817fa9348 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1314,78 +1314,6 @@ This approach leads to an improved gene expression profile for quantifying
 gene regulations.")
       (license license:expat))))
 
-(define-public r-numbat
-  (let ((commit "4ab7752e7d267a3f443756675728521a9b0a7295")
-        (revision "1"))
-    (package
-      (name "r-numbat")
-      (version (git-version "1.3.2-1" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/kharchenkolab/numbat")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0wa2cz5iy570r2a57bd74jramxayvfhmxznb0vq4vyk1ia8l5jd1"))))
-      (properties `((upstream-name . "numbat")))
-      (build-system r-build-system)
-      (propagated-inputs
-       (list r-ape
-             r-catools
-             r-data-table
-             r-dendextend
-             r-dplyr
-             r-genomicranges
-             r-ggplot2
-             r-ggraph
-             r-ggtree
-             r-glue
-             r-igraph
-             r-iranges
-             r-logger
-             r-magrittr
-             r-matrix
-             r-optparse
-             r-paralleldist
-             r-patchwork
-             r-pryr
-             r-purrr
-             r-r-utils
-             r-rcpp
-             r-rcpparmadillo
-             r-rhpcblasctl
-             r-roptim
-             r-scales
-             r-scistreer
-             r-stringr
-             r-tibble
-             r-tidygraph
-             r-tidyr
-             r-vcfr
-             r-zoo))
-      (home-page "https://github.com/kharchenkolab/numbat")
-      (synopsis "Haplotype-Aware CNV Analysis from scRNA-Seq")
-      (description
-       "This package provides a computational method that infers copy number
-variations (CNVs) in cancer scRNA-seq data and reconstructs the tumor
-phylogeny.  numbat integrates signals from gene expression, allelic ratio, and
-population haplotype structures to accurately infer allele-specific CNVs in
-single cells and reconstruct their lineage relationship.  numbat can be used
-to:
-
-@enumerate
-@item detect allele-specific copy number variations from single-cells;
-@item differentiate tumor versus normal cells in the tumor microenvironment;
-@item infer the clonal architecture and evolutionary history of profiled
-tumors.
-@end enumerate
-
-numbat does not require tumor/normal-paired DNA or genotype data, but operates
-solely on the donor scRNA-data data (for example, 10x Cell Ranger output).")
-      (license license:expat))))
-
 (define-public r-p2data
   (let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c")
         (revision "1"))