gnu: Add python-setuptools/python-wheel where necessary.

Changes to pyproject-build-system require explicit dependency on
setuptools/wheel.

Change-Id: Icd7699fc1dc56e974ae7568f2ae916dbf876bea5

1 files changed, 17 insertions, 6 deletions

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 821be215c8..b22d2ffb57 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -682,6 +682,7 @@ memory usage.")
      (list python-numpy python-pysam))
     (inputs
      (list r-minimal))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://wlcb.oit.uci.edu/cpat/")
     (synopsis "Alignment-free distinction between coding and noncoding RNA")
     (description
@@ -2084,7 +2085,7 @@ Format (GFF) with Biopython integration.")
            python-scikit-learn
            python-scipy))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/simonvh/fluff/")
     (synopsis "Analysis and visualization of high-throughput sequencing data")
     (description
@@ -2894,6 +2895,7 @@ cells).")
            (("'argparse',") "")))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/cancerit/parabam")
     (synopsis "Parallel BAM File Analysis")
     (description "Parabam is a tool for processing sequencing files in
@@ -2962,6 +2964,7 @@ encountered in PDB files prior to simulation tasks.")
            python-tqdm
            python-typing-extensions
            python-zipp))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/haessar/peaks2utr")
     (synopsis "Python CLI for annotating three prime UTR")
     (description
@@ -3325,7 +3328,8 @@ features:
                              python-pandas
                              python-pysam
                              python-tqdm))
-    (native-inputs (list python-cython python-pytest))
+    (native-inputs (list python-cython python-pytest python-setuptools
+                         python-wheel))
     (home-page "https://github.com/KindLab/scDamAndTools")
     (synopsis "Functions for processing raw scDam&T-seq data")
     (description
@@ -3358,6 +3362,7 @@ counts.")
            python-numpy
            python-pybedtools
            python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/r3fang/SnapTools")
     (synopsis "Tools for processing snap files" )
     (description
@@ -3387,6 +3392,7 @@ operations:
     (arguments (list #:tests? #false)) ;there are none
     (propagated-inputs (list python-click python-numpy python-pandas
                              python-parabam python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/cancerit/telomerecat")
     (synopsis "Telomere computational analysis tool")
     (description "Telomerecat is a tool for estimating the average telomere
@@ -5630,7 +5636,9 @@ annotations of the genome.")
            python-pytest
            python-pytest-mock
            python-pytest-timeout
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://cutadapt.readthedocs.io/en/stable/")
     (synopsis "Remove adapter sequences from nucleotide sequencing reads")
     (description
@@ -5925,7 +5933,7 @@ accessing bigWig files.")
                  (("tests/data/" m)
                   (string-append (getcwd) "/" m))))))))
       (propagated-inputs (list python-numpy))
-      (native-inputs (list python-nose))
+      (native-inputs (list python-nose python-setuptools python-wheel))
       (home-page "https://github.com/brentp/pyfasta/")
       (synopsis "Pythonic access to fasta sequence files")
       (description
@@ -9189,7 +9197,7 @@ experiments.")
     (propagated-inputs
      (list python-cython python-numpy))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/macs3-project/MACS")
     (synopsis "Model based analysis for ChIP-Seq data")
     (description
@@ -16378,6 +16386,7 @@ mapped paired-end sequencing reads.")
            python-cython
            python-msgpack
            python-pysam))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://pypi.org/project/genomic-regions/")
     (synopsis "Consistently handle genomic regions")
     (description "This package aims to simplify working with genomic region /
@@ -20999,7 +21008,9 @@ updated much more frequently.")
            python-tqdm))
     (native-inputs
      (list python-pytest
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/aertslab/ctxcore")
     (synopsis "Core functions for pycisTarget and the SCENIC tool suite")
     (description