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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-11-28 12:52:22 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 16:59:57 +0100 |
| commit | 587ec117f4c18121b651195f51b777d80d01c1f5 (patch) | |
| tree | 330018e4c8ff1b8297fd9cea759ba53f1a171760 /gnu/packages/bioconductor.scm | |
| parent | 3c2964c923fed450c818f6e50930b7410de87973 (diff) | |
gnu: r-diffbind: Add missing inputs and skip vignettes.
* gnu/packages/bioconductor.scm (r-diffbind)[native-inputs]: Add
r-biocstyle and r-xtable.
[properties]: Tell updater to keep r-biocstyle.
[arguments]: Skip building vignettes.
Change-Id: I0a8515301c949c99d890816f37b7da82181b094c
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0d240a1296..bc71c7005f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14182,8 +14182,12 @@ signal in the input, that lead to spurious peaks during peak calling.") (sha256 (base32 "1whb4k54wm21k74r6qyng130nnaii9czh9dhvl1x7hnqa8gq0dx7")))) - (properties `((upstream-name . "DiffBind"))) + (properties + `((upstream-name . "DiffBind") + (updater-extra-native-inputs . ("r-biocstyle")))) (build-system r-build-system) + ;; Vignettes fail with: "Only one peakset meets specified criteria." + (arguments (list #:test-types '(list "tests"))) (propagated-inputs (list r-amap r-apeglm @@ -14208,7 +14212,7 @@ signal in the input, that lead to spurious peaks during peak calling.") r-s4vectors r-summarizedexperiment r-systempiper)) - (native-inputs (list r-testthat)) + (native-inputs (list r-biocstyle r-testthat r-xtable)) (home-page "https://bioconductor.org/packages/DiffBind") (synopsis "Differential binding analysis of ChIP-Seq peak data") (description |