diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2025-01-09 16:09:30 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-01-16 10:47:23 +0100 |
| commit | fa13f86235c86ebcacf60df9ad76b2ff532caefd (patch) | |
| tree | e79e8f053bb264142cebb9a8b4832c2362b87ffe | |
| parent | 4e50474ff49dcfebc4b5430011897166f676ee44 (diff) | |
gnu: Add python-ngesh.
* gnu/packages/bioinformatics.scm (python-ngesh): New variable.
Change-Id: If51f3075037647e319efa9468331677a845b30cb
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 28 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7a3eebf23d..f12019372c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> -;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de> +;;; Copyright © 2022-2025 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com> ;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com> @@ -2884,6 +2884,33 @@ algorithmic improvements and is scalable for larger data sets (millions of cells).") (license license:expat))) +(define-public python-ngesh + (package + (name "python-ngesh") + (version "1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tresoldi/ngesh") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-ete3 python-numpy python-six)) + (native-inputs (list python-black python-flake8 python-pytest python-twine + python-wheel)) + (home-page "https://github.com/tresoldi/ngesh") + (synopsis "Library for phylogenetic tree simulation") + (description + "Ngesh is a Python library and CLI tool for simulating phylogenetic trees +and data. It is intended for benchmarking phylogenetic methods, especially in +historical linguistics andstemmatology. The generation of stochastic +phylogenetic trees also goes by the name simulationmethods for phylogenetic +trees, synthetic data generation, or just phylogenetic tree simulation.") + (license license:expat))) + (define-public python-parabam (package (name "python-parabam") |