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| author | Efraim Flashner <efraim@flashner.co.il> | 2024-05-19 12:23:04 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2024-05-19 16:10:47 +0300 |
| commit | 58614c9b4bba93773adbc502df202ae980b01eae (patch) | |
| tree | d18e538b2f4db2ea82d81b8a425f54534b5a883b | |
| parent | dd03be186adb64bdb77265dfd0ad53fe50ec016e (diff) | |
gnu: samtools: Fix build on i686-linux.
* gnu/packages/bioinformatics.scm (samtools)[arguments]: When building
for i686-linux adjust the make-flags to specifically use the sse math
libraries.
Change-Id: I322d521cbe87e10db7c23db8e68bb377db966aa7
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6aa35710e56..99db702dbf0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9468,6 +9468,11 @@ to the user's query of interest.") (build-system gnu-build-system) (arguments `(#:configure-flags (list "--with-ncurses") + ;; The samtools test suite (and software) expects SSE-based math, even on + ;; i686-linux, and not 387-based math. Adjust the CPPFLAGS accordingly. + ,@(if (target-x86-32?) + `(#:make-flags (list "CPPFLAGS = -msse -mfpmath=sse")) + '()) #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-tests |