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authorRicardo Wurmus <rekado@elephly.net>2025-01-01 15:29:14 +0100
committerRicardo Wurmus <rekado@elephly.net>2025-01-01 15:29:14 +0100
commit34a279e0da67e16136f2958242246ddade7559b4 (patch)
treef2f35df797a7cf208dadfae6123fbc308985193f
parent4b38f39022f518372c06530c51fa2c627f8c9367 (diff)
gnu: python-hicmatrix: Work around defect in python-tables.
* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2. [arguments]: Add phase 'find-blosc2. Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
-rw-r--r--gnu/packages/bioinformatics.scm11
1 files changed, 11 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b037eb6ede..5c118aed07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19351,6 +19351,17 @@ includes operations like compartment, insulation or peak calling.")
(base32
"14gq7r9b64ff56l5f8h8zc2i2y3xri646jl0anb74japqxrwvlna"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ ;; TODO: this must be fixed in python-tables
+ (add-before 'check 'find-blosc2
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "LD_LIBRARY_PATH"
+ (dirname (search-input-file
+ inputs "/lib/libblosc2.so"))))))))
+ (inputs (list c-blosc2))
(propagated-inputs
(list python-cooler
python-intervaltree